YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEPA_RHIFE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLLLSLV ALSECYIYKV PLVKKKSLRK NLMEQGLLQD YLKTHSINPA SKYLKEAASM  60
   61 MATQPLENYM DMEYFGTIGI GTPPQEFTVI FDTGSSNLWV PSVYCSSPAC SNHNRFNPQQ 120
  121 SSTYQGTNQK LSVAYGTGSM TGILGYDTVQ VGGITDTNQI FGLSETEPGS FLYYAPFDGI 180
  181 LGLAYPSIAS SGATPVFDNI WNQGLVSQDL FSVYLSSNDQ GGSVVMFGGI DSSYFTGNLN 240
  241 WVPLSSETYW QITVDSITMN GQVIACSGSC QAIVDTGTSL LSGPTNAIAS IQGYIGASQN 300
  301 ANGEMVVSCS AINTLPNIVF TINGVQYPLP PSAYVLQSQQ GCTSGFQGMD IPTSSGELWI 360
  361 LGDVFIRQYF TVFDRGNNQV GLAPVA

Type	Start	End	Confidence
Signal Peptide	1	15	0.98
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	386	0.99