YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|383383, gi\|18...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNLAGHMFDV VVIGGGISGL AAAKLLSEYK INVLVLEARD RVGGRTYTVR NEHVKWVDVG  60
   61 GAYVGPTQNR ILRLSKELGI ETYKVNVNER LVQYVKGKTY PFRGAFPPVW NPLAYLDYNN 120
  121 LWRTMDEMGK EIPVDAPWQA RHAQEWDKMT MKDLIDKICW TKTAREFAYL FVNINVTSEP 180
  181 HEVSALWFLW YVRQCGGTAR IFSVTNGGQE RKFVGGSGQV SEQIMGLLGD KVKLSSPVTY 240
  241 IDQTDDNIIV ETLNHEHYEC KYVISAIPPI LTAKIHFKPE LPPERNQLIQ RLPMGAVIKC 300
  301 MVYYKEAFWK KKDYCGCMII EDEEAPIAIT LDDTKPDGSL PAIMGFILAR KADRLAKLHK 360
  361 DIRKRKICEL YAKVLGSQEA LYPVHYEEKN WCEEQYSGGC YTAYFPPGIM TQYGRVIRQP 420
  421 VGRIYFAGTE TATQWSGYME GAVEAGERAA REVLNALGKV AKKDIWVEEP ESKDVPAIEI 480
  481 THTFLERNLP SVPGLLKITG VSTSVALLCF VLYKIKKLPC

Type	Start	End	Confidence
Non-Cytoplasmic	1	493	0.98
Transmembrane Helix	494	513	0.66
Cytoplasmic	514	520	0.59