YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19570824
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQVDLVQAN ILASGANKKT VRVVNGLGSL MGSKDMVDVD FDKDSNMDYL LRKDQEEKDV  60
   61 YKNKKHISEQ PWTINNWHQH LNWLNMVLVV GIPLIGWYFA LSGKVPLSKK VLIFSVAYYV 120
  121 LGGVSITAGY HRLWAHRAYS ARWPLRMLFA LFGAASVEGS VKWWGHSHRI HHRYTDTTRD 180
  181 PYDARRGLWF SHMGWMLLQP NPKYRARADI ADLTDDWIVR FQHRHYIPIM ALTAFILPAL 240
  241 LCHYFFNDFW GGLVYAGIIR VFAIQQATFC INSLAHYLGD QPFDDRRTPR DNWITALVTF 300
  301 GEGYHNFHHE FPTDYRNAIK WYQYDPTKVF IYTSSLLGLA YNLKKFSQNA IQQGLVQQQQ 360
  361 KKLDRSRSKL NWGTPLTQLP VWDKEEFMKS LKSNPGLVIV SGIVHDVSGY ITEHPGGETL 420
  421 IQAAAGKDAT KAFNGGVYLH SNAAHNVLAT MRVAVIKDGV DAAAKFAARR GESFSSKKAI 480
  481

Type	Start	End	Confidence
Non-Cytoplasmic	1	80	0.52
Transmembrane Helix	81	101	0.94
Cytoplasmic	102	110	0.49
Transmembrane Helix	111	134	0.87
Non-Cytoplasmic	135	142	0.50
Transmembrane Helix	143	165	0.79
Cytoplasmic	166	225	0.63
Transmembrane Helix	226	246	0.92
Non-Cytoplasmic	247	255	0.52
Transmembrane Helix	256	278	0.73
Cytoplasmic	279	480	0.65