YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182890308, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMEAEAVNH PYWPRNLSIP NYVANDRSMS EILVFLFSVS GILLFATWSL TGCKVSGSRL  60
   61 SAARRLALCW FTVCGFIHGV IEGWFSLYYA IIPEDQSFLS QLWKEYSKGD SRYAIADNFT 120
  121 VSMETVTAYM WGPFSVWTVL AFLYNRPYRF VLQLIVSLGQ LYGAVLYFFT EHRDGYIHSE 180
  181 YGHPIYFWFY FVFMNVLWIV IPFILIVDSW LQLSSCQSMF DKSTLKEKSK RS

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.94
Transmembrane Helix	32	52	0.92
Cytoplasmic	53	65	0.87
Transmembrane Helix	66	88	0.88
Non-Cytoplasmic	89	124	0.91
Transmembrane Helix	125	144	0.87
Cytoplasmic	145	149	0.85
Transmembrane Helix	150	170	0.91
Non-Cytoplasmic	171	186	0.89
Transmembrane Helix	187	210	0.87
Cytoplasmic	211	232	0.90