YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45387911, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGPRRKVKV MAMMTMVFLF IVVEVSRNAG KGSSSKNKSL VPLKRFWAKD LPSDAYWNRQ  60
   61 QQQINYINNR NLEKLNYTID NLPDWLNDTV SLDSCDPDYR VTTQVKDYNS LPDRFKDFLL 120
  121 YMRCRSYPIV VDQPNICKKQ PFLLLAIKSL VPHFDRRQAI RESWGKVGRI ANRSVVTVFL 180
  181 LGNAATEDHF PDLSKMLHHE SSIHRDILQW DYRDTFFNLT IKEVLFLEWL STRCPGANFI 240
  241 FKGDDDVFVN TIHIIDFLTN LSNAKARELF VGDVITNAGP HRDKKVKYFI PESMFVGMYP 300
  301 AYAGGGGYLF SGQLAQRLHN ISKLVPLYPI DDVYTGMCLM KMGLAPEKHK GFRTFDIEEK 360
  361 YRDNACAYKS LMLVHPRSPQ HMIKIWAWLN DPGTVSEQLL LIGFTD

Type	Start	End	Confidence
Signal Peptide	1	29	0.73
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	406	0.98