YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K2C8_DANRE
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTYSKKTSY TVKSSSSGSI PRNFSSLSYS GPSMSRQSYS ARSSYGGVNR GMGAGMGGGS  60
   61 GFISSSSAYG LGMGMGTGMG AGVVAPIQAV TVNKSLLAPL NLEIDPNIQI VRTQEKEQIK 120
  121 TLNNRFASFI DKVRFLEQQN KMLETKWSLL QNQTATRSNI DAMFEAYIAN LRRQLDSLGN 180
  181 DKMKLEADLH NMQGLVEDFK NKYEDEINKR TECENEFVLI KKDVDEAYMN KVELEAKLES 240
  241 LTDEINFLRQ IFEEEIRELQ SQIKDTSVVV EMDNSRNLDM DAIVAEVRAQ YEDIANRSRA 300
  301 EAEMWYKSKY EEMQTSANKY GDDLRSTKTE IADLNRMIQR LQSEIDAVKG QRANLENQIA 360
  361 EAEERGEMAV RDAKGRIKDL EDALQRAKQD MARQIREYQD LMNVKLALDI EIATYRKLLE 420
  421 GEEDRLATGI KAINISKQST SYGGYPMESA GSSYSTYSSG YSSGLSGGYG GGYSGGYSGG 480
  481 YSSGSGYSDT VSQTKKSVVI KMIETKDGRV VSESSEVVQD

Type	Start	End	Confidence
Cytoplasmic	1	65	0.58
Transmembrane Helix	66	87	0.55
Non-Cytoplasmic	88	520	0.88