YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68364674, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.67
Transmembrane Helix	16	36	0.93
Non-Cytoplasmic	37	57	0.60
Transmembrane Helix	58	80	0.81
Cytoplasmic	81	86	0.58
Transmembrane Helix	87	106	0.77
Non-Cytoplasmic	107	111	0.69
Transmembrane Helix	112	133	0.88
Cytoplasmic	134	144	0.76
Transmembrane Helix	145	164	0.92
Non-Cytoplasmic	165	175	0.63
Transmembrane Helix	176	195	0.91
Cytoplasmic	196	238	0.85
Transmembrane Helix	239	260	0.92
Non-Cytoplasmic	261	273	0.76
Transmembrane Helix	274	293	0.82
Cytoplasmic	294	304	0.79
Transmembrane Helix	305	324	0.91
Non-Cytoplasmic	325	331	0.77
Transmembrane Helix	332	351	0.95
Cytoplasmic	352	362	0.76
Transmembrane Helix	363	385	0.87
Non-Cytoplasmic	386	400	0.85
Transmembrane Helix	401	424	0.86
Cytoplasmic	425	461	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPATGGPVG YTPPEGGWGW AVVVGAFISI GFSYAFPKSI TVFFKEIEVI FNATSSQVSW  60
   61 ISSIMLAVMY AGGPISSILV NKFGSRPIMI AGGCLSGTGL VAASFCDTVE GLYFCVGVIG 120
  121 GLGLAFNLNP ALTMIGKYFY KRRPIANGIA MAGSPVFLST LAPLNSWLFD QFGWRGSFLI 180
  181 LGGALLNCCV AGSLMRPIGP KPQPAIPKED AEIKPQEKKT VMQTINGFLD LTLFTHRGFL 240
  241 LYLLGNVIMF FGLFAPLVFL SNYAKSKHIS KDKAAFLLSI LAFTDMIARP SMGLVANTRW 300
  301 VRPRIQYFFA ASVLYNGVCH LLAPLSTDYL GFAIYAVFFG VAFGWLSSVL FETLMDLVGA 360
  361 QRFSSAVGLV TIVECAPVLL GPPLLGRLND IYDDYKYTYQ GCGIVLVIAS IFLFVGMGIN 420
  421 YRLVDKEKKE EEKRAKLEDK DEETNLDNAL NEKEKEADGV V