YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68365230, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGVAAWLP FARAAAIGWM PVANLPMPVA PSNKNKRQDE LIILNVSGRR FQTWRNTLDR  60
   61 YPDTLLGSSE KEFFFNEETR EYFFDRDPDV FRSILNFYRT GKLHYPRYEC ISAYDEELAF 120
  121 FGIIPEIISD CCYEEYKDRK RENTERLMDD LEDNKDSKLP NMTFRETMWR AFENPHTSTM 180
  181 ALVFYYVTGF FIALSVITNV VETVPCGYMP NQRDVPCGER YTEAFFCMDT ACVMIFTVEY 240
  241 LMRLFAAPSR YRFMRSVMSI IDVVAILPYY IGLVMTNNED VSGAFVTLRV FRVFRIFKFS 300
  301 RHSQGLRILG YTLKSCASEL GFLLFSLTMA IIIFATVMFY AEKGSSSSKF TSIPASFWYT 360
  361 IVTMTTLGYG DMVPKTIAGK IFGSICSLSG VLVIALPVPV IVSNFSRIYH QNQRADKRKA 420
  421 QKVQKARLAR MRISKSGSST AFLHSKRNGL NQSLELTGSL EEDQQLKKTT SLLESQHHHL 480
  481 LHCLEKTTNH EFVDERLYEQ GYLQTALQNF PSQSPSLSSE EGITGTCCSR RPKKNIQPLN 540
  541 ATHTHSHTHN LQELSALHIQ CGEQQPLNTS RSSLNLMSDE SGSLNCKSSG LVTTAIISIP 600
  601 TPPSNNSRAS PDAPSPPNPE APPLLNPSST DVVKISAL

Type	Start	End	Confidence
Cytoplasmic	1	178	0.75
Transmembrane Helix	179	201	0.83
Non-Cytoplasmic	202	223	0.75
Transmembrane Helix	224	242	0.79
Cytoplasmic	243	252	0.77
Transmembrane Helix	253	273	0.87
Non-Cytoplasmic	274	280	0.80
Transmembrane Helix	281	299	0.64
Cytoplasmic	300	319	0.68
Transmembrane Helix	320	341	0.92
Non-Cytoplasmic	342	349	0.69
Transmembrane Helix	350	370	0.83
Cytoplasmic	371	380	0.58
Transmembrane Helix	381	402	0.91
Non-Cytoplasmic	403	638	0.77