YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37194664, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	30	0.91
Non-Cytoplasmic	31	47	0.82
Transmembrane Helix	48	71	0.85
Cytoplasmic	72	84	0.79
Transmembrane Helix	85	104	0.87
Non-Cytoplasmic	105	115	0.81
Transmembrane Helix	116	138	0.84
Cytoplasmic	139	237	0.95
Transmembrane Helix	238	259	0.85
Non-Cytoplasmic	260	281	0.83
Transmembrane Helix	282	303	0.92
Cytoplasmic	304	340	0.92
Transmembrane Helix	341	361	0.92
Non-Cytoplasmic	362	378	0.94
Transmembrane Helix	379	398	0.93
Cytoplasmic	399	417	0.86
Transmembrane Helix	418	438	0.86
Non-Cytoplasmic	439	453	0.74
Transmembrane Helix	454	474	0.82
Cytoplasmic	475	479	0.53
Transmembrane Helix	480	499	0.67
Non-Cytoplasmic	500	500	0.31
Transmembrane Helix	501	532	0.63
Cytoplasmic	533	541	0.49
Transmembrane Helix	542	565	0.86
Non-Cytoplasmic	566	583	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLRCSWSA LKPLIIISTP LAILPLPLVI KTKEAECAYV LILMAVYWMT EVLPLSVTAL  60
   61 IPALLFPLFG IMKSSQVASQ YFKDFHLLLL GVICLATSIE KWGLHRRIAL RLVTGLGVNP 120
  121 GMLMLGFMVG CAFLSMWLSN TSTVAMVMPI VEAVIQQVLS ASEEANKDHK GALNGISNPA 180
  181 LQLEDIEAQH DQSEKIKSIE AGITEPEPTS EEHETAKAPT PPYSGKYRTR EDHMMCKGLS 240
  241 LCIAYSSSIG GLTTLSGTST NLIFAEYIYQ YYPECTIVNF GNWFVLCLPI CIIMLILSWL 300
  301 FLHWMYLGSN FRASLCSRQR TEKEKITARV LRDHYNSLGP ISWQEIVTLI IFILMAILWF 360
  361 TRNPGFMPGW SSLFSDNPGY ATDATVALLL GFLFFLLPSH KLNADHYEAL ITWKDFQACM 420
  421 PWEISLLVGG GFALAEGTKI SGLSSWVAEL LTPLGSLPPL ATVTIACLIV TSITEVASNA 480
  481 ATMTIFLPIL APLAEAIGVN PLYMLIPTAL AVSFSFLLPV SNPPNAIVFT YGHLTSMDMV 540
  541 KAGLGVNVIG ILTVLLALTT WGTPLLKLDT YPDWAPVVNS TGV