YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41055239, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.82
Transmembrane Helix	71	93	0.88
Non-Cytoplasmic	94	113	0.74
Transmembrane Helix	114	138	0.75
Cytoplasmic	139	163	0.64
Transmembrane Helix	164	184	0.80
Non-Cytoplasmic	185	187	0.55
Transmembrane Helix	188	206	0.72
Cytoplasmic	207	219	0.81
Transmembrane Helix	220	242	0.91
Non-Cytoplasmic	243	301	0.82
Transmembrane Helix	302	323	0.95
Cytoplasmic	324	344	0.80
Transmembrane Helix	345	365	0.90
Non-Cytoplasmic	366	414	0.71
Transmembrane Helix	415	438	0.76
Cytoplasmic	439	439	0.35
Transmembrane Helix	440	467	0.65
Non-Cytoplasmic	468	478	0.40
Transmembrane Helix	479	502	0.74
Cytoplasmic	503	693	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDICVNVKQ PENENDEQRV QEDKREEATA EEKLISANEP SWKPWPQSRS QIRECVLNVK  60
   61 KLLVSLASME WYCYALLGII TALMSFFMDM TVAKLLNAHQ WLYGCLKGHH LLQFLCWTLY 120
  121 PACLCALSTS FAHSVCPYSA GSGVPEARAI LLGVDMPDYL SLSNLFAKMF GLICTLAAGS 180
  181 TVFLGKVGPF VHLSIMVGAF MNRLHVSCRG GKQRAAKGEM LVVASAVGVA SCFGAPISGV 240
  241 LFSIEVMGTH YSVSDYCPCF FAAACGAITF RLLSVCIGDQ DTIQALFKTS FSTDLPFQPF 300
  301 EIIIFALLGL FCSILSCIYL LCHRWALRFV KTNKPISTFL ATEKSLYSAI VAFLLACFTF 360
  361 YHSAGHFIAS ELTMRQLLTS MLDGTSWYSI SQNISALPEP QNTFWQAWNP PGKSYFQTLT 420
  421 FFIITKVGLL VVACTLPLPA GYFMPVFVYG AAVGRFIGEG SFYLLSGGIS SGKSLINPGG 480
  481 YALAGAAAFS GAVTHTLSPA LLAVEMTGQC SYAVPALVAT LVSNAVARAK HRPSFYDGIS 540
  541 LIKRLPHLPS LIRACPKLAD VQIKQFVIPA GAVLERSEKL ISVQHILKES TDSELPVVES 600
  601 RDSSVLLGTI NRSQLRECLL EHRNEDSCKQ LEEVCCVQPV RLHLTPDSTV KQAHCIMSIT 660
  661 GEQRLFITES GRLCGVITWK EMKKIIEKMA KEV