YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CISY_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLSISRLA PRLLSSKNAA CVVVAARNAS ASTNLKDVLS DLVPKEQSRI KNFKQQYGKT  60
   61 SIGQITVDMV YGGMRGVKGL VYETSVLDPD EGIRFRGYSI PECQQLLPKA PGGEEPLPEG 120
  121 LFWLLVTGQV PTEEQVSWLS KEWAKRAALP SHVVTMLDNF PTNLHPMSQF SAAITALNSE 180
  181 SSFARAYSEG VNKAKYWEFV YEDSMDLIAK LPCVAAKIYR NLYREGSSIG AIDSNLDWSH 240
  241 NFTNMLGYTE PQFTELMRLY LTIHSDHEGG NVSAHTSHLV GSALSDPYLS FSAAMNGLAG 300
  301 PLHGLANQEV LVWLTALQKE LGGEVSDEKM RDYIWNTLKS GRVVPGYGHA VLRKTDPRYT 360
  361 CQREFALKHL PNDPMFKLVA QLYKIVPNVL LEQGKAKNPW PNVDAHSGVL LQYYGMTEMN 420
  421 YYTVLFGVSR ALGVLAQLVW SRALGFPLER PKSMSTDGLM ALVGAKSG

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	468	0.98