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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28189085, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVFLLLLCL ADGVVSQIRY SVPEEAEHGT FVGNIAEDLG LDLTKLSSRR FQVVPSSRTP  60
   61 YLEVNLENGV LFVNEKIDRE RICKQSASCL LHLEVFLENP LELFRVEIEV VDINDNPPSF 120
  121 PETDFTVEIS ESATPGTRFP LESAFDPDVG SNALRTYDIT TNNYFYLDVQ TQTDGNKFAE 180
  181 LVLEKPLDRE QQAMHRYVLT AVDGGQPPRT GTALLVVRVL DSNDNVPVFD QPVYSVNLAE 240
  241 NAPVGTLVIQ LNATDSDEGP NGEVIYSFSN HISSRVKELF DIDARTGRIE VRGEVDFEES 300
  301 GLYQIYVQAK DMGPNAVPAH CKVLVKVTDV NDNAPEIIFS TVTESVSENA ATGTVIALLS 360
  361 VTDKDSEDNG QTHVEILGDV PFKLKTSFRN YYTIVTDGPL NRETVEAYTV TVVARDKGIP 420
  421 SLATSKSIKV HVSDENDNAP TFTQPVYDVY VTENNVPGAY IYAVSAVDPD VGQNAYITYS 480
  481 IVECEIQGMS VVTYVSINSE NGYLYALRSF DYEQLKDFSF MVQARDSGSP ELWSNATVNV 540
  541 IIVDQNDNAP SVIAPVGKNG TAREPLPRSA EPGYLVTRIV AMDADDGENA RLSYSIQRGN 600
  601 ENGMFRMDWR TGELRTARRV SVKRDPQQLY ELLIEVRDHG QPPMSCSAVV QVTLVDSLVE 660
  661 GHSGERGTAK AKDASLDLTL ILIIALGSVS FIFLLAMIVL AVRCQKDKKL NIYSTCLASD 720
  721 CCCLVGCGSC GSGGCCGRQA RAARKKKKLS KSDIMLVQST NTANVSVASA AQVPVEESGS 780
  781 FGSLHQSQNY CYQVCLTPES AKTDLMFLKA CSPSRSNDTD HNPCGAIVTG YTDQQQPDII 840
  841 SNGSLLSSET KHQRAELSYL VDRPRRVNSS AFQEADIVSS KDSGHGDSEQ GDSDHDAMHR 900
  901 GHSSGADLFS NCTEECKALG HSDRCWMPSF VPTEARQGAD YRSNLHVPGM DSVPDSEVFE 960
  961 GEMLAGDQSF STFGKETPHH PNQMHQHQHH QHNLNASTLE RKEFDALLCN SRMPYKAACL1020
 1021 SRKRIC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle