YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28933427, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTINFTFWN ASDGNETMET ADESPYKTVE VVFIVLVAGS LSLVTVIGNI LVMLSIKVNR  60
   61 SLQTVNNYFL FSLACADLII GLCSMNLYTV YIVIGYWPLG PVVCDLWLAL DYVVSNASVM 120
  121 NLLIISFDRY FCVTKPLSYP VNRTTKMAGM MIAAAWVLSF ILWAPAILFW QFIVGGRTVP 180
  181 EKECYIQFFS NAAVTFGTAI AAFYLPVIIM MVLYWQVSRA SKSRVKKDNR KPSGGNLDVA 240
  241 SSNQIRENSA NKPTNNNLTA EETDRGQTQL TDDTINQHDA KLQNGKAPST ASGEAEEAGQ 300
  301 ANCIPAEEKE SSNDSTSGSG AVTNQKEEAA PPSSAAANDS QTSTRHRAKA GGSKLTCIKI 360
  361 ITKSPKGDCY APSNATVEIV PAVERQNHVA RKIVKMTKQP PKKKKAPSSR EKKVTRTIMA 420
  421 ILVAFVATWT PYNVMVLINA FCSSCIPNTV WTIGYWLCYI NSTINPACYA LCNITFKKTF 480
  481 KQLLLCQYKN IRSTR

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.95
Transmembrane Helix	32	54	0.91
Cytoplasmic	55	67	0.85
Transmembrane Helix	68	92	0.88
Non-Cytoplasmic	93	107	0.82
Transmembrane Helix	108	131	0.82
Cytoplasmic	132	147	0.91
Transmembrane Helix	148	170	0.88
Non-Cytoplasmic	171	194	0.89
Transmembrane Helix	195	217	0.91
Cytoplasmic	218	413	0.99
Transmembrane Helix	414	432	0.89
Non-Cytoplasmic	433	452	0.64
Transmembrane Helix	453	475	0.69
Cytoplasmic	476	495	0.88