YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25092729, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.46
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.46
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	239	0.88
Transmembrane Helix	240	261	0.95
Cytoplasmic	262	271	0.82
Transmembrane Helix	272	293	0.89
Non-Cytoplasmic	294	325	0.84
Transmembrane Helix	326	347	0.84
Cytoplasmic	348	363	0.71
Transmembrane Helix	364	384	0.80
Non-Cytoplasmic	385	409	0.89
Transmembrane Helix	410	432	0.91
Cytoplasmic	433	451	0.91
Transmembrane Helix	452	474	0.91
Non-Cytoplasmic	475	513	0.96
Transmembrane Helix	514	534	0.95
Cytoplasmic	535	557	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAVREVGPC VYKTYCVFIT TLLFGLSSAQ YHGEKGISVP EHGFCQPISI PLCTDIQYNQ  60
   61 TIMPNLLGHT NQEDAGLEVH QFYPLVKVQC SQDLKFFLCS MYAPVCTVLE QAIPPCRTLC 120
  121 ERARQGCEAL MNKFGFQWPE RLRCENFPVH GAGEICVGQN KSDPDVPTTN PTPYIPEPFS 180
  181 PRIHTPRQNQ AFTCPLQLTV PSYLNYHFLG AKNCGAPCEH KQPYGLMYFK EEEVRFGRLW 240
  241 VGIWSILCCV STLFTVLTYL VDMRRFHYPE RPIIFLSGCY FMVAVAYAAG FLLEDKVVCI 300
  301 DKFRDDAFKT VAQGTKKEGC TILFMVLYFF GMASSIWWVI LSLTWFLSAG MKWGHEAIEA 360
  361 NSQYFHLAAW AVPAVKTITI LALGQVDGDL LTGVCYVGIY NVDALRGFVL APLFVYLFIG 420
  421 TSFLLAGFVS LFRIRTIMKH DGTKTEKLEK LMVRIGVFSV LYTVPATIVI ACYFYEQAFR 480
  481 EQWEKTWHMQ TCKRFAVPCP NNNFAPMTPD FTVFMIKYLM TMIVGITSGF WIWSGKTLQS 540
  541 WRRFYKRLGN NQGETTV