YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCLT1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSPRGVCFL LFLLLGSVFG SVFMLGPLLP LMLLSPSRYR WITDRIVATW LTLPVALLEL  60
   61 VLGVKVVVTG DGFIPGERSV IIMNHRTRLD WMFLWCCLLR YSYLRQEKIC LKAALKSVPG 120
  121 FGWAMQVASF IFIQRRWEDD RTHMSNMLQY FCRIREPVQL LLFPEGTDLT ENTRARSDEF 180
  181 AEKNGLQKYE YVLHPRTTGF TFIVDTLRGG DNLDAVHDIT VAYPQNIPQT ERHLLAGVFP 240
  241 REIHFHVQRF TVASVPAGAA GLQAWCQERW REKERRLQRF YETVPRRFDA PAVGVCVREP 300
  301 CCQSGQCVCV PRCKSEGRVR IILVASLLYW SVFITAACAS LCLCPPAQFY FLFMVVFFLC 360
  361 QQRFTGGLEL MELACHRYWS RRSADKQE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.55
Transmembrane Helix	7	29	0.76
Non-Cytoplasmic	30	45	0.66
Transmembrane Helix	46	69	0.68
Cytoplasmic	70	320	0.64
Transmembrane Helix	321	343	0.83
Non-Cytoplasmic	344	348	0.46
Transmembrane Helix	349	371	0.51
Cytoplasmic	372	388	0.54