YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51010971, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYSRSSFK SSGGSMSGGS RFSMSGSGGG GGRVSGMYAG SVHGGAGGYG TRISSASASR  60
   61 SYSAGGGGGF GGGAGFGGGA GGGFGGGFGG GAGGDAFDVS ANDKATMQNL NDRLASYLEK 120
  121 VRSLEKANAD LELKIRQFLD SKTSPSARDY SAYYATISDL QNKIQDATRI NGGIYLSIDN 180
  181 AKLAADDFRV KYENELSMRQ SVEADIAGLR KVLDELTMTR SDLEMQIEGL KEELIFLKKN 240
  241 HEEELLAARG QMSGQVHVEV DAAPQEDLTK VMADIREHYE QVAAKNQRDL EHWFQSKSES 300
  301 LNKEVAASTE TLQSTKSEIT ELKRTLQGLE IELQSQLSMK ASLEGTLADT QARYGNMLNG 360
  361 YQMQVGNMEE QLMQLRADLE RQGQEYQMLL DIKTRLEMEI AEYRRLLDGE ASRSSQTVST 420
  421 TKTSSTSSSA PSSTSTSTTT RKVVTIVEEV KDGKVISSTQ AVTESK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.56
Transmembrane Helix	21	40	0.47
Non-Cytoplasmic	41	466	0.57