YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGAWDVAFV LLHVWMSIVA GLIVLPAMFG VSLGFTDIYI KLLVKTLEWA TLRIQRGQKE  60
   61 QPTLPLQLAN GIIEKDDGSM EEEIVELRRS HPKNLAEGNF TLCDAFYFCK KGIENIVEDQ 120
  121 VTQRFSSEEL ASWNLLTRTN NNFRYISVRL TIIWGLGVFV RYCVLLPLRI TLAVIGLSWL 180
  181 VIGTTLVGFL PNSKVKNWLS DLVHITCYRI CARGLSATIR YHNKENRPKK GGICVANHTS 240
  241 PIDIVILAND GCYAMVGQVH GGLMGVIQRS MVRSCPHVWF ERSEMKDRHA VAKRLKDHIS 300
  301 DKTKLPILIF PEGTCINNTS VMMFKKGSFE FGGTIYPVAI KYDPRFGDAF WNSAKYNMVS 360
  361 YILRMMTSWA IVCNVWYLPP MTQQDGEDAV HFANRVKSAI AHQGGLVDLS WDGGLKRSKV 420
  421 KESFKEEQQK MYSSMIVGLD SHEATVGPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.80
Transmembrane Helix	12	35	0.86
Cytoplasmic	36	144	0.85
Transmembrane Helix	145	165	0.81
Non-Cytoplasmic	166	169	0.62
Transmembrane Helix	170	190	0.90
Cytoplasmic	191	360	0.75
Transmembrane Helix	361	378	0.35
Non-Cytoplasmic	379	449	0.53