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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|134054520, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNCIRIRNW LPIACLLLTM WTKVSQSSGY FELQLIAVEN VNGELWDGEC CDSTRNSQDQ  60
   61 RCVRDECDTY FKVCLKEYQS EVTTTGQCTF GSGSTDVLGG NIISFKTAKN SPSKTSDVGK 120
  121 IIIPFHFAWP RSYTLILEAW DWDNSTQNNG EENLIERHIH ASMVNPGDHW QSIRHPGITA 180
  181 HIEYRIRVRC DENYYGSKCN KQCRPRDDYF GHYRCDPSGN IVCLDGWMGE DCRTAICKQG 240
  241 CNLIHGGCAV PGECKCNYGW QGQFCDECLP YPGCLHGTCV MPWQCTCEKN WGGLLCDKDL 300
  301 NYCGTHHPCV NGGTCMNSEP DEYNCACPEG YSGKNCEIAE HACVSNPCAN GGTCHEVPTG 360
  361 FECHCPPGWE GPTCAKDMDE CASSPCAQGG TCIDLENGFE CVCPPQWVGK TCQIDANECM 420
  421 GKPCVNAHSC KNMIGGYHCD CFQGWAGQNC DINLNGCHGQ CQNGATCKEL VHGGYHCQCP 480
  481 AGFVGLHCEV SRNKCASGPC QNGGRCHVIL DSFVCECPSN YAGMLCEVES LSHPNPCEPN 540
  541 PCQNTALCYS LPGDFYCACP EDYEGKTCEN RKDHCKMTPC QVIDSCTIAV ASNSSDGGVR 600
  601 HINSNVCGPH GRCISQPGGN FTCTCELGFT GTYCHENVND CVSNPCRNGG TCIDGISSFQ 660
  661 CFCPDGWEGD LCSINVNECS RSPCKNGGHC VDLVNDFYCE CANGWKGKTC HSRESQCDSS 720
  721 TCSNGGTCYD HGDAFRCACP PGWEGSTCNT AKNSTCASGP CLNGGTCVGG GDTFTCICKD 780
  781 GWEGATCAQN TNDCNPHPCY NGGICVDGVN WFRCECAPGF AGPDCRINID ECQSSPCAYG 840
  841 ATCVDEINGF RCVCPLGRTG PQCQEFIGIG KTCHYAGLQF PHGSRWEEEC NTCQCVNGKV 900
  901 ECTKVVCGRK PCLLPGTPGR ELHYCPGGRE CLEHNFLTCL SPPCHQWGFC SSPETPPTLQ 960
  961 TKCEPNSVYL DKSCARITLI FNRDKLPTGT TVENVCSELR YMPATRSLAK DHKLLVLCDL1020
 1021 SYKNQDAVEV AISFQHDEQP SHSQIQEAAS TIVSTLSKRH NSTVMLAVIE VKVEMPVTSQ1080
 1081 PVDYLVPVLC VVLCVLWVFC VIVCVWWTRK RRKERERRER VPVEESVNNQ WEPLRPVTRP1140
 1141 QHKDNRDAQF ERTKLMGSPD RTCNSGDDEE DMEEDELELV EEWCGTEGGK HPVQKYSKSA1200
 1201 ARTKNGLICT TRSTSGSSSP SLKAAYWTGF SPKDNNCKNV NNATAGQEHK EHCV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle