YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.88
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	60	0.88
Transmembrane Helix	61	79	0.83
Cytoplasmic	80	85	0.61
Transmembrane Helix	86	104	0.89
Non-Cytoplasmic	105	121	0.71
Transmembrane Helix	122	141	0.71
Cytoplasmic	142	147	0.48
Transmembrane Helix	148	167	0.58
Non-Cytoplasmic	168	177	0.63
Transmembrane Helix	178	197	0.87
Cytoplasmic	198	210	0.80
Transmembrane Helix	211	230	0.91
Non-Cytoplasmic	231	246	0.77
Transmembrane Helix	247	268	0.85
Cytoplasmic	269	276	0.79
Transmembrane Helix	277	294	0.74
Non-Cytoplasmic	295	300	0.58
Transmembrane Helix	301	322	0.89
Cytoplasmic	323	336	0.67
Transmembrane Helix	337	358	0.90
Non-Cytoplasmic	359	367	0.69
Transmembrane Helix	368	390	0.89
Cytoplasmic	391	436	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTYSTNMRL KFPILALILE IITIVLYALF VVYDTGDDKG HGDHHEKSNQ TESPMTLYPM  60
   61 FQDVHVMIFI GFGFLMTFLK RYGFTSVGVN LLLAAFGLQW GLLLQNVWHM HGGKIRVSID 120
  121 RMINADFSTA TVLISFGAVL GKTSPVQLLI MTLLEITTFC INEYLVVEIL GVSDVGASMT 180
  181 IHAFGAYFGL SVARVLYRPG LRNGHDNDGS LYHSHLFAMI GTVYLWMFWP SFNSAIATPG 240
  241 DHQLRAVVNT YFSLAACALA AYATSSLVEK KGKLDMVHIQ NATLAGGVAV GTCADMDIQP 300
  301 FGAMLIGITA GIISTVGFKF LTPILASKLG IQDTCGVHNL HGMPGILGGV AGILAAALKR 360
  361 KEGVSPTYQA AGLASSLGFA LVGGLITGLI MKIPFLGQPP DQNCFDDSIY WEVPEEEEET 420
  421 EERLTHGDYS KNKAEA