YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45120100, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	78	0.83
Transmembrane Helix	79	101	0.88
Non-Cytoplasmic	102	117	0.91
Transmembrane Helix	118	139	0.84
Cytoplasmic	140	148	0.77
Transmembrane Helix	149	170	0.78
Non-Cytoplasmic	171	231	0.77
Transmembrane Helix	232	251	0.93
Cytoplasmic	252	306	0.89
Transmembrane Helix	307	326	0.84
Non-Cytoplasmic	327	342	0.86
Transmembrane Helix	343	365	0.92
Cytoplasmic	366	506	0.97
Transmembrane Helix	507	525	0.94
Non-Cytoplasmic	526	586	0.65
Transmembrane Helix	587	605	0.47
Cytoplasmic	606	633	0.73
Transmembrane Helix	634	656	0.86
Non-Cytoplasmic	657	706	0.77
Transmembrane Helix	707	728	0.84
Cytoplasmic	729	828	0.81
Transmembrane Helix	829	848	0.78
Non-Cytoplasmic	849	902	0.45
Transmembrane Helix	903	926	0.80
Cytoplasmic	927	946	0.58
Transmembrane Helix	947	972	0.72
Non-Cytoplasmic	973	1029	0.60
Transmembrane Helix	1030	1051	0.85
Cytoplasmic	1052	1070	0.56
Transmembrane Helix	1071	1096	0.85
Non-Cytoplasmic	1097	1147	0.60
Transmembrane Helix	1148	1171	0.82
Cytoplasmic	1172	1179	0.51
Transmembrane Helix	1180	1202	0.85
Non-Cytoplasmic	1203	1276	0.65
Transmembrane Helix	1277	1300	0.85
Cytoplasmic	1301	1368	0.85
Transmembrane Helix	1369	1392	0.90
Non-Cytoplasmic	1393	2082	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANGPAPPA ATPAAPPAAA VPVPSVVPVG SLAQKKRAQY AKSKKQGSSA NTRPQRALFC  60
   61 LNLNNPIRRA CISLVEWKPF DIFILIAIFA NCMALAVYVP FPEDDSNSTN HDLETVEYAF 120
  121 LIIFTIETFL KIIAYGLVMH QNAYVRNGWN MLDFVIVVIG LFSVVLEVLT KEGGEKEEVG 180
  181 ENLSAHGHGG KPGGFDVKAL RAFRVLRPLR LVSGVPSLQV VLNSIIKAMV PLLHIALLVL 240
  241 FVIIIYAIIG LELFIGKMHA SCYFQGTDIL EDEPAPCAVN GHGRTCPING TLCKEGWQGP 300
  301 NGGITNFDNF MFAMLTVFQC ITMEGWTDVL YWMNDAMGLE LPWVYFVSLV IFGSFFVLNL 360
  361 VLGVLSGEFS KEREKAKARG DFQKLREKQQ LEEDLKGYLD WITQAEDIDP ENEEEEEESK 420
  421 RNRVTLASLM EKKKKGFGWF SQSSDTHASM PASETESMNT ENEKGEDEKA TCCGPTCQKI 480
  481 SKSKFSRRWR RWNRLCRRNC RLAVKSVPFY WLVIILVFLN TLTISSEHYN QPMWLTQVQD 540
  541 VANKVLLAMF TCEMLVKMYS LGLQAYFVSL FNRFDCFVVC GGITETILVE FEIMSPLGIS 600
  601 VFRCVRLLRI FKVTRHWASL SNLVASLLNS MKSIASLLLL LFLFIIIFSL LGMQVFGGKF 660
  661 NFDETQTKRS TFDNFPQALL TVFQILTGED WNAVMYDGIM AYGGPSSSGM IVCIYFIILF 720
  721 ICGNYILLNV FLAIAVDNLA DAESLNTDDT KKPDEIDEIE DEAKAGEEDE KDNAEEDEEE 780
  781 PDVPAGPRPK ISELVKKEKI TPIPEGSAFF IFSNTNPVRV ACHKLINHHI FTNLILVFIM 840
  841 LSSASLAAED PIRNFSARNI ILGYFDYAFT AIFTVEIVLK MTTYGAFLHK GAFCRNYFNL 900
  901 LDLLVVGVSL VSFGIQSSAI SVVKILRVLR VLRPLRAINR AKGLKHVVQC VFVAIRTIGN 960
  961 IMIVTTLLQF MFACIGVQLF KGKFYRCNDE AKSSPEECKG TYILYKEGDV NQPIIQKRHW1020
 1021 HNSDFNFDNV LMAMMALFTV STFEGWPALL YKAIDSNREN MGPIYNYRVE ISIFFIIYII1080
 1081 IIAFFMMNIF VGFVIVTFQE QGEKEYKNCE LDKNQRQCVE YALKARPLRR YIPKNPYQYK1140
 1141 FWYVVNSTGF EYIMFVLILL NTICLAVQHY GQSELFNYVM DILNMVFTAV FTVEMVLKLI1200
 1201 AFKPRHYFTD AWNTFDALIV VGSVVDIAIT EVNNTEDSAR ISITFFRLFR VMRLVKLLSR1260
 1261 GEGIRTLLWT FIKSFQALPY VALLIAMLFF IYAVIGMQVF GKIAMVDHTQ INRNNNFQTF1320
 1321 PQAVLLLFRC ATGEAWQEIM LACMPGKLCD PESDYNPGEE MTCGSSFAII YFITFYMLCA1380
 1381 FLIINLFVAV IMDNFDYLTR DWSXLGPHHL DEFKRIWSEY DPEAKGRIKH LDVVTLLRRI1440
 1441 QPPLGFGKLC PHRVACKRLV AMNMPLNSDG TVMFNATLFA LVRTAXKIKT EGNLEQANEE1500
 1501 LRAVIKKIWK RTSMKLLDQV VPPAGDDEVT VGKFYATFLI QDYFRKFKKR KEEGLVGVHP1560
 1561 AQNNTAIALQ AGLRTLHDIG PEIRRAISCD LQDDELVDFI PEEDEEIYRR NGGLFGNHIN1620
 1621 HINGDPRRSS GHQTNATQRP LQVQPPPHYV HMEQPVGRLG RANAMAQQNH HRHHHHHHHH1680
 1681 HHHNNSYNKS PKSTNINLNN ANVSSXPNGG HNRYYEHAPA NGYPGSYYGE YDKPRTPHGQ1740
 1741 RRRYYETYIR SQGSDRRRPT IRREEEYEED RYSGEYYSGE EFYEDDSMLS GDRYPNSDQE1800
 1801 YETPRGYHHP DSYYEDDEQP LYHDSHRSPK RRLLPPTPQG NRRPSFNFEC LRRQSSQDDL1860
 1861 PHQRTALPLH LMQHQVMAVA GLDSSRAHRL SPTRSTRSWA SPPPTPASKD RTPYYTPLIR1920
 1921 VDRPLRDSAS SSHSSIRKSS WYTDDPEYQQ RNXSPVHLQV PPEYRNQYLQ KRGSATSLVE1980
 1981 AVLISEGLGR YAKDPKFVAA XKHEIADACE MTIDEMESAA SHXLNGGITP VVNGVNVFPI2040
 2041 LGHREYELQD VSASYSDEEP EPEPRPRYEE DLADEMICIT TL