YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ASI1C_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAMKGDSED SIESMRPSNL QVFANNSTLH GMSHIFAYGH MTFRRFLWTL SFMGSLGLLM  60
   61 YVCMDRVYYY FEFPHVTKLD EVAAPNLTFP AVTFCNLNEF RFSKITKNDL YHVGELLALL 120
  121 NENYQIANPH LADPEVLTLL KEKASFNGFK PKQFNMTDFY NRTGHDINEM LLQCSFRGEE 180
  181 CFPLNFTTIY TRYGKCYTFN SGLDGNPLLT TLKGGTGNGL EIMLDIQQDE YLPVWGDTDE 240
  241 TSYEAGIKVQ IHSQDEPPFI DQLGFGVAPG FQTFVSCQQQ LLLYLPPPWG DCRSAPMDSE 300
  301 YFSTYSITAC RIDCETRYLL ENCNCRMVHM PGTSTVCTPE QYKDCADPAL DFLVEKDNDY 360
  361 CVCDTPCNMT RYGKELSMVK IPSKASAKYL AKKFNKTEQY ITDNILVLDI FFEALNYEKI 420
  421 EQKKAYEVAG LLGDIGGQMG LFIGASVLTI LEIFDYLYEV LKDKILGSVL RKRRPHRSAS 480
  481 DNLVIVSLHD FKISSVFLLA SYMCFVCYIV LLNAACVYLP FVVGSNSGK

Type	Start	End	Confidence
Cytoplasmic	1	21	0.76
Transmembrane Helix	22	38	0.33
Non-Cytoplasmic	39	45	0.38
Transmembrane Helix	46	69	0.76
Cytoplasmic	70	429	0.53
Transmembrane Helix	430	451	0.38
Non-Cytoplasmic	452	497	0.67
Transmembrane Helix	498	522	0.85
Cytoplasmic	523	529	0.62