YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47550769, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	155	0.98
Transmembrane Helix	156	175	0.79
Cytoplasmic	176	187	0.74
Transmembrane Helix	188	208	0.88
Non-Cytoplasmic	209	215	0.69
Transmembrane Helix	216	237	0.91
Cytoplasmic	238	244	0.70
Transmembrane Helix	245	268	0.85
Non-Cytoplasmic	269	281	0.79
Transmembrane Helix	282	304	0.88
Cytoplasmic	305	315	0.73
Transmembrane Helix	316	335	0.92
Non-Cytoplasmic	336	348	0.68
Transmembrane Helix	349	371	0.88
Cytoplasmic	372	380	0.84
Transmembrane Helix	381	401	0.79
Non-Cytoplasmic	402	411	0.70
Transmembrane Helix	412	433	0.83
Cytoplasmic	434	448	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTALVFLCL LFLTCAGDPD HTEPRTLQYL RIGDGSAREF QFPQNTRGVI VISSQYRSSG  60
   61 GRKGRDSLKQ TLRVRSLDPD VISILNVSDS GPQSSYTISI RSGLPGTAPL LLQLLELSRD 120
  121 AEPLLIEERS DYSIRVEAAP EHMEAGGLQH FSENPVLFAL LPLIFVNKCA FGCKVEVEVL 180
  181 LALLRRPVPL LLGVAAQFLL MPLYAFALSQ LAALPTALAL GLVITCSAPG GGGGYLYSLL 240
  241 LGGDVTLAIC MTLVSTVVAT AAMPLSSALY GRLLGVHAAL HVPFVKILGT LLFIAIPISL 300
  301 GLLVKLRVPA VASVLLALIR PFSFVLIVGG IFMAYQMGSS ILAHVRAPMV VVGVTVPVFG 360
  361 LLAGLALARL AGLASPQRRT VGIEVGVQNS LLALAVMQLS FQRAEADYAS QAPFIVALSS 420
  421 TSEMLLLVLA HIARSRLCPP APATRTLS