YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29436434, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	56	0.93
Non-Cytoplasmic	57	78	0.92
Transmembrane Helix	79	101	0.92
Cytoplasmic	102	107	0.95
Transmembrane Helix	108	127	0.95
Non-Cytoplasmic	128	133	0.78
Transmembrane Helix	134	155	0.92
Cytoplasmic	156	164	0.87
Transmembrane Helix	165	187	0.89
Non-Cytoplasmic	188	192	0.80
Transmembrane Helix	193	215	0.84
Cytoplasmic	216	273	0.95
Transmembrane Helix	274	296	0.80
Non-Cytoplasmic	297	309	0.83
Transmembrane Helix	310	330	0.93
Cytoplasmic	331	336	0.94
Transmembrane Helix	337	359	0.92
Non-Cytoplasmic	360	387	0.96
Transmembrane Helix	388	410	0.89
Cytoplasmic	411	422	0.82
Transmembrane Helix	423	443	0.90
Non-Cytoplasmic	444	455	0.79
Transmembrane Helix	456	478	0.90
Cytoplasmic	479	498	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEYEENRPL LVNDERTEED RSEQDAYLDK VKNGKLFIAT FAAVLGPLSF GFVLGYSSPA  60
   61 IPELRRIQDL RLQLSVEEAS WFGSVVTIGA ALGGLLGGWI VERIGRKLSL MFCAIPFIFG 120
  121 FTTIIAAQNH WMFYVGRVLT GLASGVTSLV VPLYISEMAH ERVRGTLGSC VQLMVVIGIM 180
  181 GAYVTGLFLD WRWLAVASSI PPTLMLLSMC FMPETPRFLL CQGKRREAED ALRFLRGPDA 240
  241 PAEWECARIE DAYKNEEQSF SLGDLKDPGV YKPLGIGVMM MLLQQFTGIN AIMFYAETIF 300
  301 EQAHFKSSDV ATVIVAATQV VFTAIAALIM DKAGRKVLLI LSGVVMCVSE AVFGVYFKLT 360
  361 VMKPNNSSMT SVLTDTHGLL EDQPSADLAW LAVGSMGFFI AGFAIGWGPT PWLVMSEIFP 420
  421 TRVRGLGSAL CVLTNWTCAF IVTKTFQNLM DALSSAGTFW MFSALCASNV VFTAFFVPET 480
  481 KGKTLEEIQA GFKGTRMR