YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182890146, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFSSRSYV SSGGGFGGGS LRGASLGGMS SSSMMGGGSR ISSMRAGSVY GGAGGCGVRI  60
   61 SSAAGGGGGA GFGFGGGAGG GGGFGFGGGA GGGFGGGDMD LNVTVNEKAT MQNLNDRLAT 120
  121 YLDKVRSLEK ANADLELKIR QFLESKTSPA ARDYSAYQAT IKDLQDKIQD ATRVNGGVYL 180
  181 AVDNAKLAAD DFKTKYENEL TMRQSVEADI AGLKRLLDEL TLARSDLEMQ IEGLKEELIF 240
  241 LKKNHEEELA AMRSQMSGSV NVEVDAAPQV DLNHVMAEIR EQYENVAAKN QRDLENWFQT 300
  301 KSETLTKEVA ASTETIQVSK TELTELRRTL QGLEIELQSE LSKKASLEGT LADTEARFSR 360
  361 QLMHLQTQVT NLEEQIVQLR ADMDRQGQEY KMLLDIKTRL EMEIAEYRRL LDGGASSMIS 420
  421 TGGGGGGGSS STSSTSSSST KSITVKTIVE DIVDGQVVSS SKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.51
Transmembrane Helix	13	37	0.61
Cytoplasmic	38	45	0.52
Transmembrane Helix	46	67	0.61
Non-Cytoplasmic	68	71	0.46
Transmembrane Helix	72	96	0.74
Cytoplasmic	97	463	0.69