YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27475929, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.94
Transmembrane Helix	57	75	0.79
Non-Cytoplasmic	76	88	0.79
Transmembrane Helix	89	110	0.88
Cytoplasmic	111	133	0.75
Transmembrane Helix	134	149	0.77
Non-Cytoplasmic	150	166	0.64
Transmembrane Helix	167	186	0.94
Cytoplasmic	187	195	0.82
Transmembrane Helix	196	214	0.93
Non-Cytoplasmic	215	242	0.85
Transmembrane Helix	243	263	0.86
Cytoplasmic	264	281	0.96
Transmembrane Helix	282	306	0.88
Non-Cytoplasmic	307	357	0.88
Transmembrane Helix	358	379	0.78
Cytoplasmic	380	398	0.90
Transmembrane Helix	399	417	0.95
Non-Cytoplasmic	418	434	0.81
Transmembrane Helix	435	454	0.90
Cytoplasmic	455	461	0.77
Transmembrane Helix	462	484	0.90
Non-Cytoplasmic	485	491	0.82
Transmembrane Helix	492	514	0.88
Cytoplasmic	515	518	0.70
Transmembrane Helix	519	539	0.58
Non-Cytoplasmic	540	547	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTGRDGDAL DESVPQEPDL YSPVSPVPQE EPVSTYFEEK VPIPDDGTEK LFSFRKLWAF  60
   61 TGPGFLMSIA YLDPGNIESD LQSGAKAGFK LLWVLLGATI IGLLLQRLAA RLGVVTGMHL 120
  121 AEVCNRHYPT VPRIILWLMV ELAIIGSDMQ EVIGCAIALN LLSVGRIPLW AGVLITIVDT 180
  181 FVFLFLDKYG LRKLEAFFGF LITIMALSFG YEYVRVAPDQ AAVLQGMFLP YCRGCGPSQL 240
  241 EQAVGIVGAV IMPHNIYLHS ALVKSRDINR SNKKEVKEAN KYYFIESSIA LFVSFLINVF 300
  301 VVAVFAEAFY GKTNMEVSQQ CNETGSPHTD LFPANNETLE VDIYKGGVVL GCFFGPAALY 360
  361 IWAVGILAAG QSSTMTGTYS GQFVMEGFLN LRWSRFARVL LTRSIAIFPT LLVAVFQDVQ 420
  421 HLTGMNDFLN VLQSMQLPFA LIPILTFTSL TSLMHDFANG LVWKIGGGLL ILLVCAINMY 480
  481 FVIVYVTDLN STVLYVLAAL LSIAYLSFVI YLVWRCLLAL GVSALACGSS AEFPAAALIQ 540
  541 EQPEFDS