YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S20AB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.61
Transmembrane Helix	26	46	0.91
Non-Cytoplasmic	47	61	0.64
Transmembrane Helix	62	84	0.73
Cytoplasmic	85	104	0.59
Transmembrane Helix	105	125	0.83
Non-Cytoplasmic	126	162	0.63
Transmembrane Helix	163	185	0.89
Cytoplasmic	186	202	0.85
Transmembrane Helix	203	225	0.89
Non-Cytoplasmic	226	232	0.81
Transmembrane Helix	233	255	0.93
Cytoplasmic	256	500	0.98
Transmembrane Helix	501	520	0.79
Non-Cytoplasmic	521	547	0.76
Transmembrane Helix	548	568	0.93
Cytoplasmic	569	637	0.57
Transmembrane Helix	638	660	0.91
Non-Cytoplasmic	661	665	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTTLATIT IMSTLVGYTT GPLTDYMWLL IVGFIIAFVL AFSVGANDVA NSFGTAVGSG  60
   61 VVTLRQACIL ASIFETLGSV LLGAKVSETI RKGIIDVTMY KDIEHVLMAG SVSAMFGSAV 120
  121 WQLAASFLKL PISGTHCIVG ATIGFSLVAK GQQGVKWLEL LRIVASWFLS PLLSGVMSAV 180
  181 LFYFVRMFIL QKKDPVPNGL RALPFFYAVT MGINLFSIMF TGAPMLGFDK LPWWGVLLIS 240
  241 IGFGIITALI VWFAVCPRLK KKIECEVKSS SPSESPLMEK RELHEAHSPI LKPVPEESSV 300
  301 LSSSTPTTPP LPPPEERRVT FDIGDSDDAD QKDCKESDLG GAPKTAHVHF TNGPAHIPSN 360
  361 GYSQYHTVHK DSGLYKDLLH KLHLAKVGDC MGEGGDRPIR RNNSYTSYTM AIIGMHGDFK 420
  421 PKESEFRASE DGDKEKAGAQ ERKRIRMDSY TSYCNAVAEN GTPEDLGEGE VTLEMVDEDA 480
  481 GSSRSSLEED RTDADKPEVS MLFQFLQILT ACFGSFAHGG NDVSNAIGPL VALWLVYESG 540
  541 SVISSAPTPI WLLLYGGVGI CVGLWVWGRR VIQTMGRDLT PITPSSGFSI ELASAVTVVV 600
  601 ASNIGLPVST THCKVGSVVA VGWLRSRKAV DWRLFRNIFM AWFVTVPISG LISAAIMALF 660
  661 NYVIL