YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47086453, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADASQVTS GSLNDSQHDP GKMFIGGLSW QTSPDSLRDY FCKFGEIREC MVMRDPTTKR  60
   61 SRGFGFITFA DVSSVDKVLA QPHHELDSKT IDPKVAFPRR AQPKMVTRTK KIFVGGLSAS 120
  121 TVVEDVKQYF EQFGKVEDAM LMFDKTTNRH RGFGFVTFEN EDIVEKVCEI HFHEINNKMV 180
  181 ECKKAQPKEV MFPPGTRGRA RSLPYTMDAF MLGMGMLSYP NIVATYGRGY TGFSPSYSYQ 240
  241 FPGFPATAYG PVAAAAVAAA RGSGFPDYGF YSGPGDQRAA PCSFADYATL GPHTGQMLQS 300
  301 EHVTSTCNSP SQHHPSPDHF KSSGANPPRP GGFPGANSPG PVADLYGPSS QDSAVGNYIS 360
  361 AASPQPGSGF NHSIAGPLIA TAFTNGYH

Type	Start	End	Confidence
Cytoplasmic	1	204	0.68
Transmembrane Helix	205	223	0.63
Non-Cytoplasmic	224	245	0.81
Transmembrane Helix	246	265	0.56
Cytoplasmic	266	388	0.62