YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207746, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWNLLGSI LEEVHIHSTI VGKIWLTILF IFRMLVLGVA AEDVWDDEQS EFVCNTEQPG  60
   61 CKNVCYDQAF PISLIRYWVL QIIFVSSPSL VYMGHALYRL RALEKERHKK KVQLKVELEE 120
  121 SEALEEHKRI EKELRKLEEQ KKVRKAPLRG SLLRTYVFHI LTRSVVEVGF IVGQYMLYGI 180
  181 GLTPLYKCER DPCPNSVDCF VSRPTEKNIF MIFMLVISGV SLFLNLLEIF HLGVKKIKQT 240
  241 IYGSMYSDDD SICRSKKNSM VQQVCFLTNS SPQKQLHLTH TSLAMAPDGQ MVPLPIYMQT 300
  301 AGHVVSNINP NGSVQPLRQD RLPSQPEIQV LQQLGIKERR SIPDNRLQSC SSEDSGPKGS 360
  361 EPPKYSQQPR ASFRASHIEI PAALRKHSRV SQCKDFSEES DSVESGNYPT ARKASFMSRG 420
  421 LSESPSESAA SKSGSDTEAN RITQGESPAM TPPPAAGRRM SMVRKF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	41	0.88
Non-Cytoplasmic	42	76	0.96
Transmembrane Helix	77	98	0.91
Cytoplasmic	99	154	0.96
Transmembrane Helix	155	176	0.72
Non-Cytoplasmic	177	208	0.79
Transmembrane Helix	209	232	0.87
Cytoplasmic	233	466	0.81