YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TTY2L_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSRQDYIA PWWTYWLHNF PHLNFNFQTV DNTFKPEDAS YQQSLVFLAC VSAVALGLCL  60
   61 LLLSVYLTCL CCCRREEDEE VKRPDTCCVT WAAVITGLVI CSAVGVGFYG NSETNDGVYQ 120
  121 LTYSIYNANH TLGGIGSMVG NSLGSMQVGL KEHLERLDEI FSPRGDYTQT LRFMQQMADN 180
  181 IIQQLTAMPE TRKVQVDLAA IADRTAFIEY YRWLTYLLLL ILDLVICLLA CLALAKQSRW 240
  241 LLTVIMVCGM LTLIMSWASL GAGTATAVGT SDFCVSPDKY IVNQTKGTLS SDIVHYYLYC 300
  301 SQSLPNPFQQ SLTIFQRSLT TMQIQVQGLL QFAVVVFPTA EKDLLGIQRL LNSSEFNLHQ 360
  361 LTALLDCRSL HKDYLEALLG VCYDGVEGLL YLCLFSLLAA CAFCALLCAV PRAWMLIAIR 420
  421 DRDYDDIDEE DPFNPTRRFN AYNPSRAQVH SFCSYSSSMG SQTSLQPPLQ ATSSTPEYMN 480
  481 QSMLFERNPR YENVPLIGSG SPPPSYSPSM RTTYLSMTDA QIRHFGTDFQ V

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.79
Transmembrane Helix	45	70	0.87
Cytoplasmic	71	86	0.94
Transmembrane Helix	87	109	0.93
Non-Cytoplasmic	110	212	0.78
Transmembrane Helix	213	234	0.92
Cytoplasmic	235	239	0.69
Transmembrane Helix	240	261	0.90
Non-Cytoplasmic	262	387	0.82
Transmembrane Helix	388	410	0.92
Cytoplasmic	411	531	0.93