YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S20AA_DANRE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.40
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.40
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	28	0.52
Transmembrane Helix	29	50	0.83
Cytoplasmic	51	61	0.48
Transmembrane Helix	62	84	0.73
Non-Cytoplasmic	85	104	0.71
Transmembrane Helix	105	125	0.88
Cytoplasmic	126	131	0.69
Transmembrane Helix	132	152	0.77
Non-Cytoplasmic	153	162	0.87
Transmembrane Helix	163	185	0.92
Cytoplasmic	186	202	0.90
Transmembrane Helix	203	226	0.87
Non-Cytoplasmic	227	232	0.85
Transmembrane Helix	233	256	0.92
Cytoplasmic	257	485	0.98
Transmembrane Helix	486	504	0.65
Non-Cytoplasmic	505	531	0.63
Transmembrane Helix	532	552	0.92
Cytoplasmic	553	571	0.75
Transmembrane Helix	572	590	0.58
Non-Cytoplasmic	591	621	0.43
Transmembrane Helix	622	648	0.87
Cytoplasmic	649	652	0.41

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTTLASLA AVSVLAAGAQ TDMSDVLWLL ILGFVIAFIL AFSVGANDVA NSFGTAVGSG  60
   61 VVTLRQACIL ATIFETVGAM LLGAKVSETI RSGIIDVHMY NGSEAVLMAG SISAMFGSAV 120
  121 WQLAASFLKL PISGTHCIVG ATIGFSMVAR GHQGVKWLEL LRIVASWFLS PLLSGIMSAV 180
  181 LFYFVRKFIL NKDDPVPNGL RALPVFYAVT MGINLFSIMF TGAPMLGFDR IPWWGTLLIS 240
  241 LGCAILTALV VWFIVCPRLK KKMQSKCLGP NIADTSGTQL VEKKPSSNGL MDHHPGPPRN 300
  301 YSPVPQTPPA DSNKVAFDIG GSAETDLDKK EFDTKDQDCT HALNGSGGIV IPDLSGNQFH 360
  361 TVHKDSGIYK DLLHKLHLAK VGECIGEPVE KPIRRNNSYT SYTMAIYGIH GSLKDGEGGS 420
  421 RTGLDGEKRR SRYDSYNSYC TAVADGEAAL EDAALAVGME DEALREDVLE EDIDELEIDK 480
  481 PEVSTLFQFL QILTACFGSF AHGGNDVSNA IGPLVALWLI YDSASVAPSA PTPIWLLLYG 540
  541 GVGICTGLWI WGRRVIQTMG KDLTPITPSS GFSIELASAI TVVVASNIGL PVSTTHCKVG 600
  601 SVVSVGWLRS RKAVDWHLFR NIFIAWFVTV PISGLISAAI MALFYYVILP LT