YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41054331, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	61	0.93
Non-Cytoplasmic	62	69	0.80
Transmembrane Helix	70	89	0.96
Cytoplasmic	90	109	0.87
Transmembrane Helix	110	133	0.91
Non-Cytoplasmic	134	192	0.96
Transmembrane Helix	193	214	0.93
Cytoplasmic	215	222	0.88
Transmembrane Helix	223	245	0.87
Non-Cytoplasmic	246	273	0.93
Transmembrane Helix	274	296	0.86
Cytoplasmic	297	303	0.91
Transmembrane Helix	304	326	0.88
Non-Cytoplasmic	327	416	0.92
Transmembrane Helix	417	437	0.90
Cytoplasmic	438	457	0.82
Transmembrane Helix	458	478	0.91
Non-Cytoplasmic	479	489	0.79
Transmembrane Helix	490	512	0.93
Cytoplasmic	513	532	0.95
Transmembrane Helix	533	554	0.93
Non-Cytoplasmic	555	580	0.95
Transmembrane Helix	581	604	0.89
Cytoplasmic	605	651	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKLVLPNP GLEERILNHE ALERLEVEEA GDRPKWDNKA QYMLTCVGFC VGLGNVWRFP  60
   61 YLCQSHGGGA FMIPFLILLV FEGIPLLHLE FAIGQRLRKG SVGVWRTINP YMLGVGIASM 120
  121 CVSFLVSLYY NTIIAWVMWY FFNSFQDPLP WSQCPINENR TGPIPECGKS SPVDYFWYRE 180
  181 TLNTSAAIDD TGGLQVWMVL CLISAWAVLY VCCIRGIETT GKAVYVTSTL PYLVLTIFLI 240
  241 RGLTLKGSVD GIKFLFTPDI NELANPSTWL DAGAQVFYSF SLAFGGLISF SSYNSVHNNC 300
  301 EQDAVIISVI NAFTSIYAAT VIYSIIGFRA TERFDDCMNG NILTLLNTFD LPEGFINQSN 360
  361 YQDVFQSLNS TSPDIISSLS LKTCDLNNFL SEGVEGTGLA FIVFTEAITK MPLSPLWSVL 420
  421 FFIMLFCLGL SSMFGNIEGV LVPLQDLGVF PKSWPKEIIS GVTCLVCCLV GLIFVQGSGN 480
  481 YWLALFDSFA GSIPLLIIAF SEMIGVVYVY GIDRFNEDLI FMIGHKPNIF WQATWRFISP 540
  541 LIMLAIFVFY FSTTVTKEIF YSAWDPESEN FPTLEKKPYP TWIYVIIFLL AGVPSLAVPG 600
  601 TAVFRAIRDY CCKKHPSASI QQLDSVSYKV QMHDEEVKTQ KTEKFDQKLY T