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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CDKAL_DANRE
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMALVCDTAV DDIEDMVRIT DVTPLQRQAA RKSVVPRARK HKQETGEQMQ TDSVIPGMQK  60
   61 VWLKTWGCSH NSSDGEYMAG QLAVAGYQIT EDSSDADLWL LNSCTVKSPA EDHFRNAIRK 120
  121 AQEQNKKVVL AGCVPQAQPR MDYIKDLSII GVQQIDRVVE VVDEAIKGHS VRLLGQKKEK 180
  181 GKRLGGARLD LPKIRKNPLI EIISINTGCL NACTYCKTKH ARGDLASYPV EELVERVRQS 240
  241 FQEGVCEIWL TSEDTGAYGR DIGSDLPTLL WRLVEEIPEG AMLRLGMTNP PYILEHLEEM 300
  301 SRILQHPRVF SFLHVPLQSA SDSVLMEMRR EYCCADFTHL VDYLKERVPG ITIATDIICG 360
  361 FPGETDEDFE QTLALVRRYR FPSLFINQFY PRPGTPAALM QQLPAHVKKQ RTKELSALFH 420
  421 SYRPYDHKMG EQQQVLVTEE SFDSQYYVAH NKFYEQVLVP KRPEYLGKMV QVEVYECGKH 480
  481 YMKGRPLEEA PLRTAYTTAP LLKGQVSGHT QAGVCEPQCW MPDGMRILAV VLLLSAVLLA 540
  541 LLMEKLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle