YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21311551, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGRL LENAQEHSTV IGKVWLTVLF IFRILVLGAA AEEVWGDEQS DFTCNTQQPG  60
   61 CENVCYDEAF PISHIRFWVL QIIFVSTPTL IYLGHVLHIV RMEEKRKERE EELRKASRLQ 120
  121 EEKELLYRNG GGGEPGGRGG GGKKEKPPIR DEHGKIRIRG ALLRTYVFNI IFKTLFEVGF 180
  181 ILGQYFLYGF QLRPLYKCAR WPCPNTVDCF ISRPTEKTIF IIFMLVVACV SLLLNLLEIY 240
  241 HLGWKKVKQG MTNEFAPDRE SLPEADEAEP ESPRTAPPTL SYPPDYTEVA VAGGAFLQPV 300
  301 SAPSTAEFKM DPLREELEES SPFYISNNNN HRLAAEQNWA NLATEQQTRE MNATSPCSSS 360
  361 SSCSSDNVRQ SKDAAQLAST PSSAGGGLST GPEEGHVTTT VEMHEPPVIF TDARRLSRAS 420
  421 KASSVRARPN DLAV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	76	0.98
Transmembrane Helix	77	99	0.92
Cytoplasmic	100	164	0.98
Transmembrane Helix	165	186	0.89
Non-Cytoplasmic	187	218	0.94
Transmembrane Helix	219	241	0.90
Cytoplasmic	242	434	0.97