YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADA2B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSPCPVAVG LPGHTNGTGG TSSPTCNQSM IKLAPYSPEA TAAFATAITL MMLITIVGNI  60
   61 LVIIAVLTSR SLRGPQNLFL VSLAAADILV ATLIIPFSLA NELMGYWYFR SVWCEIYLAL 120
  121 DVLFCTSSIV HLCAISLDRY MSISRAVTYG PKRTPKRIKC AILVVWLISA VISFPPLLSM 180
  181 NKNKGGGESG ALPQCQLNDE RWYILYSTIG SFFAPCLIMI LVYMRIYQIA KQRTRCPPGE 240
  241 PRKEAPANAT TPQHKIQNGR GDETPGTLQK KARPPTLAVS QVESVQQAAN TPIANNLLQA 300
  301 PSTTLTPTTP CPSPSPSNSS EVAPSKSKEG KKEKKKKKNN KNKNKKEPDN NNGESMSSDS 360
  361 DTEQGGRGLE VPCTPTMTPS GIHSPATMQK YRDMIATAKG AKLVARKAKQ DGTPNSARRK 420
  421 AMVNREKRFT FVLAVVIGVF VICWFPFFFS YSLQAVCPES CALPEPLFKF FFWIGYCNSC 480
  481 LNPVIYTIFN KDFRRAFKKI LCKNTKGTFF

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.97
Transmembrane Helix	43	67	0.90
Cytoplasmic	68	77	0.87
Transmembrane Helix	78	100	0.92
Non-Cytoplasmic	101	115	0.93
Transmembrane Helix	116	137	0.92
Cytoplasmic	138	157	0.93
Transmembrane Helix	158	178	0.92
Non-Cytoplasmic	179	201	0.95
Transmembrane Helix	202	224	0.90
Cytoplasmic	225	428	0.99
Transmembrane Helix	429	449	0.96
Non-Cytoplasmic	450	469	0.92
Transmembrane Helix	470	490	0.91
Cytoplasmic	491	510	0.95