YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STAR3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSAVDYSEL GGSLPAIASL NASYSQASLS LPSPYYCPLP PGERKAFSDV RRTFCLFVTF  60
   61 DLLFITLLWI IELNISKSIW NSLENEVVHY NFKSSFFDIF LLAVFRFLCL QLGYAAFRLR 120
  121 HWWVIAITTL VTTAFLIAKV ILSDLFSQNA FGYVLPITSF VVAWLETWFL DFKVLTQEAE 180
  181 DERVYLAAVN AACEPAPLIC PRPVSDGQFY SPPESLAGSE DDLDEEGLGR RAVTEQEKAF 240
  241 VRQGREAMAV VEQILTQEEN WKFEKTNELG DAVYTLEIPF HGKTFILKGL LQCTAELVYQ 300
  301 EVILQPEKMV QWNRTVSVCQ ILQRVDDNTM VSYDVSAGAA GGVVSPRDFV NVRRVERRRD 360
  361 CYISAGMATN HNSKPHHSRY VRGENGPGGF VVLKSSSNPS VCTFIWVLNT DLKGRLPRYL 420
  421 IHQSLAATMF EFMSHLRQRI NEVHVSYR

Type	Start	End	Confidence
Cytoplasmic	1	52	0.94
Transmembrane Helix	53	73	0.93
Non-Cytoplasmic	74	93	0.88
Transmembrane Helix	94	114	0.84
Cytoplasmic	115	121	0.76
Transmembrane Helix	122	142	0.94
Non-Cytoplasmic	143	149	0.85
Transmembrane Helix	150	170	0.70
Cytoplasmic	171	448	0.69