YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24111242, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	229	0.99
Transmembrane Helix	230	251	0.97
Cytoplasmic	252	262	0.91
Transmembrane Helix	263	283	0.91
Non-Cytoplasmic	284	313	0.91
Transmembrane Helix	314	336	0.89
Cytoplasmic	337	351	0.86
Transmembrane Helix	352	372	0.88
Non-Cytoplasmic	373	396	0.89
Transmembrane Helix	397	421	0.90
Cytoplasmic	422	441	0.89
Transmembrane Helix	442	464	0.87
Non-Cytoplasmic	465	501	0.91
Transmembrane Helix	502	523	0.92
Cytoplasmic	524	580	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAAGVGLSL GLLCFAGFCS AISSIDPDRP GEGRCQEIAI PLCKDIGYNL TVMPNLMGHE  60
   61 DQNEAAIKLH EFAPLIEFGC HSHLKFFLCS LYAPMCTEQV STPIPACRVM CEQARQKCSP 120
  121 IMEQFNFHWP ESLDCSRLPN KNDPNYLCME APNNGTDEPP KGSHTQSPDS RPPRPGNSQE 180
  181 LPIKERVGKT TCSNPGKFHY VQKSESCAPK CYSNVDVYWS QGDKRFSMVW IAIWSILCFI 240
  241 SSAFTVLTFL IDPQRFKYPE RPIIFLSMSY CVYSVGFLVR LFVGVENVAC DRDTGVQYII 300
  301 QEGLESTGCT IVFLILYYFG MASSLWWVIL TLTWFLAAGK KWGHEAIEAN SSYFHLAAWA 360
  361 IPAIKTIMIL VMRKVAGDEL TGVCYVGSMD VKALTGFVLI PLSCYLIIGT SFLLSGFVAL 420
  421 FHIRKVMKTE GENTDKLEKL MVRIGVFSVL YTVPATCVIA CYFYERLNMD YWKILAGEQK 480
  481 CADDGKSGEE CVMKSSIPAV EIFMVKIFML LVVGITSGMW IWTSKTLQSW QNVFSRKLKK 540
  541 KTRRKAACVF TGSGPYLKPH PALKGHKTKY EPAGPPATCV