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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40363535, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVRLCLLVA FLGAKLPLVG TEEDSGPFLT PFPPPLPLNA DAHLSPNCSQ LTLKLDFSTQ  60
   61 VVKHEYIVAF NGYFTAKARS DFISSALRDV DAVKWRIVRR DNPASDYPSD FEVVEIKQDT 120
  121 RNSLLTLQDH PYIKRVTPQR MVLRSLKFTD SGTDGASPCN DTRWVQKWQS WQSSRPLRRT 180
  181 SLSLSSGFWH ATGRHSSRRF LRAIPRHVAQ ILQADVLWQM GHTGSGVKVA VFDTGLSEKH 240
  241 PHFKNVKERT NWTNEKTLDD GLGHGTFVAG VIASMRECQG FAPDSELHIF RVFTNNQVSY 300
  301 TSWFLDAFNY AILKKIDVLN LSIGGPDFMD HPFVDKVWEL TAKKVIMVSA IGNDGPLYGT 360
  361 LNNPADQMDV IGVGGIDFED NIARFSSRGM TTWELPGGYG RVKPDIVTYG SGVRGSGLKE 420
  421 GCRSLSGTSV ASPVVAGAVT LLASTVLNRE LVNPASMKQA LIASARRLPG VNMFEQGHGK 480
  481 LDLLRAYQIL NSYKPQASLS PSYIDLTECP YMWPYCSQPI YYGGMPTIVN VTILNGMGVT 540
  541 GRIVEKPIWQ PYLPQNGDYV DVAVSYSPVL WPWAGYLAVS ISVAKKAASW EGIAQGHVMV 600
  601 TVASPAENDS AIGGEMTSTV KLPVKVKIVP TPPRSKRILW DQYHNLRYPP GYFPRDNLRM 660
  661 KNDPLDWNGD HIHTNFRDMY QHLRSMGYFV EVLGAPITCF DASQYGTLLM VDSEEEYFPE 720
  721 EITKLRRDID NGLSLIVFSD WYNTSVMRKV KFYDENTRQW WMPDTGGANV PALNDLISVW 780
  781 GMAFSDGLYE GDFTLADHDM YYASGCSIAR FPEDGIVIAQ TLKDQGLEVL KQETAVVENV 840
  841 PVLGLYQTPS DGGGRIALYG DSNCIDDSHR QKDCFWLLDA LLQYTSYSMT PPSLTHSKNR 900
  901 LVPPTGTDRP LPQRLEGNHL YRYSKVLEAH LGDPKPRPLP ACPHLSWAKP QPLNETAPSN 960
  961 LWKHQKLLSV DMDKVVLPNV RAYRPQVRPL SPGESGAWDI PGGIMPGRYN QEVGQTIPDV1020
 1021 AFLGAMVVLS FFVVQLTKAK SKPKRRKPRV KRPLYLQQQQ QQQQTPHSGK NPTV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle