YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AA2DB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSTITFLL PNSSEDTNGT SAPRLPPHSQ CASVLIVLVV TVIILVTIVG NVLVVVAVFT  60
   61 SRALRAPQNL FLVSLAAADI LVATLVIPFS LANEVMGYWY LGSTWCAFYL ALDVLFCTSS 120
  121 IVHLCAISLD RYWSVTKAVS YNLKRTPRRI KIMITVVWVI SAVISFPPLL MTKHDELECL 180
  181 LNNETWYILS SCIVSFFAPG LIMILVYCRI YRVAKQRAST VFVAKNGMER QPSQSETCFV 240
  241 RKGKSEVESP SSHSSGSRER KGELDDIDLE ESSVSNRHRN SRFAKSRKVE GAQSCPKPNG 300
  301 RLSWACSRAS ELEQEPRARQ LSLSKSKLAQ MREKRFTFVL AVVMGVFVLC WFPFFFTYSL 360
  361 HAICRKSCTI PDSLFNLFFW IGYCNSSVNP IIYTIFNRDF RKAFKKIMCR HSTRT

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.96
Transmembrane Helix	34	59	0.90
Cytoplasmic	60	69	0.86
Transmembrane Helix	70	92	0.91
Non-Cytoplasmic	93	106	0.86
Transmembrane Helix	107	129	0.89
Cytoplasmic	130	149	0.93
Transmembrane Helix	150	171	0.91
Non-Cytoplasmic	172	185	0.95
Transmembrane Helix	186	208	0.94
Cytoplasmic	209	335	0.99
Transmembrane Helix	336	356	0.95
Non-Cytoplasmic	357	376	0.89
Transmembrane Helix	377	397	0.92
Cytoplasmic	398	415	0.96