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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|37620143, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.68
Topology Confidence: 0.14
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNYSLWIFL SILYLVHNSE GLLCVDTHRP CENGGMCIDS RCLCRPGYIG SLCQHLDPCH  60
   61 RSPCLNAAAC KSQVANSIPQ YTCVCQRGFR GQDCSLVDAC ATSPCANGAR CTNWNNHYNC 120
  121 SCPPGYQGKN CRNDIDECRK PGKCLNGGIC MNTHGSFRCE CLTGYSGRTC EVPTQPCAPS 180
  181 QCLNGGTCHQ TGDHTYECAC LPGFRGHNCE DNVDDCPGHK CMNNGICVDG VNTYNCQCPP 240
  241 EWTGQYCAED VNECLMQPNA CHNGGTCFNT IGGHTCVCVN GWTGDDCSEN IDDCATAVCF 300
  301 NGATCHDRVA SFFCECPVGK TGLLCHLDDA CVSNPCNEGA VCDTNPLNGR AICTCPAGFV 360
  361 GGACNQDMDE CSIGANPCEH FGKCVNTEGS FQCQCGRGYT GPRCEIDINE CLSMPCQNDA 420
  421 TCLDRIGEFT CICMPGYQGK YCEVDIDECE SNPCVNDGIC RDMVNGFTCT CQPGFTGTMC 480
  481 QIDIDECAST PCQNGAKCID RPNGYECRCA EGFEGRLCES NIDNCKPDPC HHGTCVDGIA 540
  541 SYTCNCEPGY TGYRCENQLN ECHSNPCQNG GKCVDLVNKY ICQCQHGTSG TNCEINFDDC 600
  601 ASNPCDYGIC KDGINRYECV CKPGFTGPQC KDEIDECQSN PCRNGGTCVD DENGFHCQCP 660
  661 EGFHDPYCYS QVDECASNPC LHGTCRDDPN GYRCDCEPGW VGKNCDLDRN DCLPSPCQNA 720
  721 GTCFDQLNGF TCKCRQGFRG NLCQVNINEC ASSPCLNQGT CVDGVASFTC LCEPPYSGPT 780
  781 CAELLTPCSP NPCANHASCV HTPDYLGYQC NCQPGWQGHL CNNDINECTS NPCKNRGTCT 840
  841 NTLGGYVCSC RAGYTGPNCE TDINDCSPNP CLNGGSCTDG VNSFRCSCLP GFTGARCATE 900
  901 LNECQSVPCK NGGTCTDYVN SYTCTCKPGF TGLLCETNVP DCTESSCFNG GTCTDGINGF 960
  961 KCTCRTGFTG DYCQYEVNEC DSQPCLNGGI CQDAMESYRC SCPKGYTGPR CQYPVDWCRP1020
 1021 SNPCKNGGRC RQKDASFTCD CLGGWSGRYC DIPGVSCEVA ARQRGRQTDE LCLHGGHCVN1080
 1081 TGNTHYCKCP ADYTGSYCES QFDHCEEKPC LNGATCRSYM GGFTCDCMPG YEGNNCEREV1140
 1141 NECQSHPCQN GGTCIDLVGH YICSCPPGTL GVLCEINEDD CATPSWPRGM PKCQNNGTCV1200
 1201 DRVGGYRCNC PPGFTGERCE GDINECLSNP CNPSNSLDCI QLPNDYQCVC KPGFTGRGCQ1260
 1261 SRFSVCESQP CKNGGVCSLS GSSPPGYSCT CQLGYAGSNC ERSMNCKELP CYNGGSCTLT1320
 1321 TRGARCTCIQ GFGGPLCQHR SNDGCSSKPC HNGGLCTEET SYPFFHCQCT NGWKGKRCEQ1380
 1381 KTGSSAPLPS PCPIADCFSK ANDGVCDKEC NSLDCRWDGG DCSLAVNPWA RCADPRCWRL1440
 1441 FNNSQCDEFC NNAECLFDNF DCINKEKVCN PIYEAYCTDH YADGLCDQGC NTEECGWDGL1500
 1501 DCARKIPEDL AEDMLVIVVL LPPEELLRTQ TAFLQKLSAI LRTTLRFRLD RNGDYMIRPY1560
 1561 TGRETRIKRE LNPQEVIGSI VYLEIDNRLC SQGSDDCFRN ADSAAEYLGA LSAREMLRFP1620
 1621 YPIKEVTSEK REPSITEIPE WARLLLVGVA SLFLLVILMV GMLIARRKRE HSTLWFPEGF1680
 1681 FLKKETSSNK NRREPVGQDS LGMKHMPKTV EESLLADHSD QWIDTDCPEA KRLKVEEPSI1740
 1741 LSDGEDAVDS RQWTQHHLAA ADIRMPPSMA LTPPQGEFDS DCMDVNVRGP DGFTPLMLAS1800
 1801 FCGGGLEPEV TEDDDSDESS ANIISDLIYQ GASLAAQTDR TGETALHLAA RYARADAAKR1860
 1861 LLDAGADANA QDNTGRSPLH AAVAADAQGV FQILIRNRAT DLDARMYDGS TALILAARLA1920
 1921 VEGMVEELIT CHADVNAVDE IGKSALHWAA AVNNVEATIA LLKNGANKDM QDLKEETPLF1980
 1981 LAAREGSCEA VKVLLAHFAN REITDHMDRL PRDIAQERMH HDIVQLLDEY NTVRSPQGHA2040
 2041 GAGHHLSGSH TLSPLMCPPS NFLQGLKSTP QGKKNRRPGA KGIGGQHASG LKDSAKGRNK2100
 2101 RLTLDMQSAL LESSVTLSPV DSLDSPRGGA SNAGYVTNPT SPAAMPSPGL FHSSMSVPNT2160
 2161 PMVHSSILDS TSPFSVSLAQ LSDLGDGGLS MQGRVGMQGG GVNPGPHNYV MNAGQMSLSM2220
 2221 GMVSPVSVPF DWHNRMPPSS QCSQPMISMV HPVSSQAGML PQTPTLQSSM LLHQQVFRNA2280
 2281 QQPILQPTPV SSTPSISPVK LPPIAEQQPQ QLHSHTLTNP NLSRMATSTP PTPQQAQPPP2340
 2341 AFYQPQQPQA QPPQAPTAPQ ATQAQAIPSQ APPAQVSGST AGPEDYPTPP SQHSYSSAMD2400
 2401 ATPKHYLHVP NEHPYLTPSP ESPEPWSSPS PHCVSDWSDS TPSPAVTAPS QTQISQVQES2460
 2461 NGKMQVFA

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