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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18858397, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACVTTVGLG VIFFLFRVFS SGYTHMSICT PGFELEEFVF KVHRNHLHSG KRLGKVTFNN  60
   61 CDGRTRTLFQ SIDKRFEINT DGTVTLKRQV TLHEGHKVFS VHAWDSSGMK HTASVRVERV 120
  121 PAQVESSSDV DLTKNKRVKR GWIIPPISVS ENSKGPFPMR LVQIKSDYAI ETRLAYKITG 180
  181 EGADLDPKGI FTIDRLSGWV SVTQLLDREK KASYKLRAHA NGVDADVTEK PMDIIVTVTD 240
  241 QNDNKPVFTQ NPFNGNVPEA LEKGEVFMTV TATDADDKEN TDNADISYVI ISQDPPSPKP 300
  301 NMFAINPVSG GISVLEKGLD REQWFRYTLV ITATDMNGEG LSTTGTAVIT VTDSNDNAPL 360
  361 FEQSSYTASV PENQVGVEVA KLPVTDGDEP ESTAWSTKYQ IIAGDKGGFF NISTGPSRLE 420
  421 GIITTVKPLD YEKTKQYILS VIVVNDDKFV GPLPTSTATV TVNVKDVNEP PEFIPKEKFI 480
  481 SRPENLPVGS NLIPFTAIDP DTEKKQNITY RIGNDPSDWL NITGSGQIQV KNALDRESSN 540
  541 VKDGKYKALI LALDNDVESP ATGTGTLVIE LQDVNDNAPV INERTIKLCN RESAPVLLSI 600
  601 TDKDLPPFAG PFKVEPQGDT SKNWSVFFNE TGHFLNIKPQ SQLEQGEYKV VLRVADREGE 660
  661 SQENIIQASV CDCKGEAFQC TDKQVAGIPL FGVLGVLGGI LLLLLLALLL LMFLRRKSNS 720
  721 KKEPLLPEDD VRDNIYYYDE EGGGEDDQDF DLSVLHRGLD NRPEVFRNDV APTFMPAPQY 780
  781 RPRPANPEEI GTFIDDNLKA ADNDPTAPPY DSLLVFDYEG GGSDAGSLSS LNTSSSGNDQ 840
  841 DYDFLNEWGP RFKKLADMYG GGED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle