YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38649039, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.95
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	238	0.99
Transmembrane Helix	239	262	0.93
Cytoplasmic	263	273	0.89
Transmembrane Helix	274	294	0.92
Non-Cytoplasmic	295	323	0.89
Transmembrane Helix	324	347	0.86
Cytoplasmic	348	363	0.77
Transmembrane Helix	364	383	0.84
Non-Cytoplasmic	384	408	0.90
Transmembrane Helix	409	432	0.89
Cytoplasmic	433	451	0.92
Transmembrane Helix	452	475	0.90
Non-Cytoplasmic	476	504	0.96
Transmembrane Helix	505	525	0.89
Cytoplasmic	526	579	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECYLLGIYL FLALALLPRS SGTTAKEITC QEIAVPLCKG IGYNYTYMPN QFNHDTQDEA  60
   61 GLEVHQFWPL VEIQCSPDLK FFLCSMYTPI CLEDYKKPLP PCRSVCERAK AGCAPLMRQY 120
  121 GFPWPDRMRC DLLPVQGAPD TLCMDYNRTD STTVSPVLSK PTNYPSKAIN PHKKKSGRPG 180
  181 VGPNKNKPCE PGCQCRAPMV PVNSDRHPLY NRVKTGQIPN CAMPCHNPYF TQDERTFTAF 240
  241 WIGLWSVLCF ISTFATVATF LIDMERFKYP ERPIIFLSAC YMFVSIGYIV RLIAGHEKVA 300
  301 CNREYDVEHI HYETTGPALC TVVFLLIYFF GMASSIWWVI LSLTWFLAAG MKWGNEAIAG 360
  361 YSQYFHLAAW LIPSMKSIAV LALSSVDGDP VAGICYVGNQ NLDNLRGFVL APLVIYLFIG 420
  421 TMFLLAGFVS LFRIRSVIKQ GGTKTDKLEK LMIRIGIFTV LYTVPATIIV ACYFYEQHNR 480
  481 QSWEITHNCS CLLEQEIKRP DYAVFMLKYF MCLLVGITSG VWTWSGKTLE SWRSFCTRCC 540
  541 WGSKGSGGSM YSDVSTGLTW RSGTASSVSC PKQMPLSQV