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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18858769, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLKNLSIC LIALLLGMTT GGSPSVQIGG LFPRGADQEY SAFRIGMVQF GTAEFRLTPH  60
   61 IDNLEVANSF AVTNCFCSQF SRGVYAIFGF YDKKSVNTIT SFCGTLHVSF ITPSFPLDGN 120
  121 QQFIIQMRPD IKGPLLSLIE YYKWDKFAYL YDSDRGLTTL QVVLDTAAEK KWQVTAINVG 180
  181 NMKDERKDEA YRSLFQDLEN KKERRVILDC EQDKVKDIME QVITIGRHVK GYHYIIANLG 240
  241 FVDGDLSKIQ YGGANVSGFQ IVDFDDPLVS KFDQRWEALE EKEYPGADSK IRYTSALTYD 300
  301 AVQVMTEAFR YLHKQRIDIS RRANNGDCLA NPAVPWAQGV EIERALKQVR VDGLTGNIQF 360
  361 DQYGKRVNYT VHVMELKSNG AVKIGYWNEV DKMVVTKSDL FPNDTMGLEN KTVIVTTILE 420
  421 APYVMLKKNA DLFMDNERYE GYCVDLAAEI AKHCGFKYQL KIVGDGKYGA RDAETKIWNG 480
  481 MVGELVYGKA DIAVAPLTIT LVREEVIDFS KPFMSLGISI MIKKPQKSKP GVFSFLDPLA 540
  541 YEIWMCIVFA YIGVSVVLFL VSRFSPYEWH TEEYEDGQIQ TNESTNEFGI FNSLWFSLGA 600
  601 FMRQGCDISP RSLPGRIVGG VWWFFTLIII SSYTANLAAF LTVERMVSPI ESAEDLAKQT 660
  661 EIAYGTLDSG STKEFFRRSK IALFDKMWTY MKGAEPSVFV KTTAEGVMRV RKSKGKYAYL 720
  721 LESTMNEYIE QRKPCDTMKV GGNLDSKGYG IATPKGSSLG NAVNLAVLKL NEQGLLDKLK 780
  781 NKWWYDKGEC GTGGGDSKEK TSALSLSNVA GVFYILVGGL GLAMLVALVE FCYKSRAEAK 840
  841 RMKVTFSDAM RSKARLSVTG STGENGRVMS PEFPKAVHAV PFVRPGVGMN VSLTDLS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle