YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14028653, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.97
Transmembrane Helix	83	104	0.83
Non-Cytoplasmic	105	113	0.77
Transmembrane Helix	114	132	0.95
Cytoplasmic	133	155	0.76
Transmembrane Helix	156	181	0.82
Non-Cytoplasmic	182	245	0.95
Transmembrane Helix	246	265	0.95
Cytoplasmic	266	273	0.89
Transmembrane Helix	274	296	0.87
Non-Cytoplasmic	297	322	0.87
Transmembrane Helix	323	344	0.91
Cytoplasmic	345	355	0.88
Transmembrane Helix	356	378	0.88
Non-Cytoplasmic	379	406	0.92
Transmembrane Helix	407	429	0.80
Cytoplasmic	430	455	0.86
Transmembrane Helix	456	479	0.93
Non-Cytoplasmic	480	486	0.81
Transmembrane Helix	487	510	0.93
Cytoplasmic	511	530	0.96
Transmembrane Helix	531	552	0.95
Non-Cytoplasmic	553	563	0.87
Transmembrane Helix	564	586	0.89
Cytoplasmic	587	629	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMLRGRPAV THTRTRTHTH MSSVSGSSSA AGPREVELVL VKEQNGVQFT SSSLRNPGAH  60
   61 SHTHTHTHTH PSGQQRETWG KKIDFLLSVI GFAVDLANVW RFPYLCYKNG GGAFLVPYLL 120
  121 FMVIAGMPLF YMELALGQYN REGAAGVWKI CPIFKGVGFT VILISLYVGS YYNVIIAWAL 180
  181 FYLFSSFSGE LPWIHCNNTW NSPNCSDPNA TLLNDTYKTT PALEYFERGV LHVHESSGID 240
  241 DLGAPRWQLT ACLAVVIVVL YFSLWKGVKT SGKVVWITAT MPYVVLTVLL LRGVTLPGAI 300
  301 DGIKAYLSVD FLRLYDAQVW IEAATQICFS LGVGFGVLIA FSSYNKFSNN CYRDAIITSS 360
  361 INSLTSFFSG FVIFSFLGYM SQKHNVALDK VATDGPGLVF IIYPEAIATL PGSSVWAVIF 420
  421 FIMLLTLGID SAMGGMESVI TGLIDEFKFL HKHRELFTLF IVVSTFLISL ICVTNGGIYV 480
  481 FTLLDHFAAG TSILFGVLIE AIGIAWFYGV DRFSDDIEEM IGQRPGLYWR LCWKFVSPCF 540
  541 LLFMVVVSFA TFNPPKYGSY YFPTWATMVG WCLSISSMIM VPLYAFYKFC SLPGSFCDKL 600
  601 AYAITPETDH HLVERGEVRQ FTLHHWLVV