YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9957869, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGNI LEEVNEHSTV IGRVWLTVLF IFRILILGTA AEFVWGDEQS DYVCNTQQPG  60
   61 CENVCYDEAF PISHIRLWVL QIIFVSTPSL VYVGHAVHHV HMEEKRKERE EAELNRQQEN 120
  121 EERLPLAPDQ GSVRTAKETS TKGSKKFRLE GTLLRTYICH IIFKTLFEIG FVVGQYYLYG 180
  181 FRILPLYKCS RWPCPNTVDC FVSRPTEKTV FIIFMLAVAC VSLFLNFVEI SHLGLKKIHF 240
  241 VFRKPVRPQV EGPGAAEKAL PSIAASSIQK AKGYKLLEED KSTSHFFPLT EVGGMEAGRL 300
  301 PASYEPFEEK SDEAMAPKKD MSKMYDETLP SYAQTTVIGP SASSGILRRG EDEDELAVEA 360
  361 DMEASETIED TRPLSSLSKA SSRARSDDLT V

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.90
Non-Cytoplasmic	42	76	0.93
Transmembrane Helix	77	99	0.89
Cytoplasmic	100	155	0.96
Transmembrane Helix	156	177	0.79
Non-Cytoplasmic	178	210	0.85
Transmembrane Helix	211	233	0.88
Cytoplasmic	234	391	0.89