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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2981139, gi|1...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATMEKLMKA FESLKSFQQQ QGPLSAEELV QKQKKDLATT KKDRVTHCLT ICENIVAQSL  60
   61 RTSPEFQKLL GIAMEMFLLC SDDKESDVRM VADECLNKII KALMDSNLPR LQLELYKEIK 120
  121 KNAASRSLRA ALWRFAELAH LVRPQKCRPY LVNLLPCLTR ITKRQEETVQ ETLSSSIPKI 180
  181 MAALGHFAND GEIKMLLKAF VANLKSSSPT IRRTAASSAV SVCQHSRRTH YFYTWLLNVL 240
  241 LGLVVPVDEE HSSHLILGVL LTLRYLMPLI QQQTPSTSLK GSFGLVRKEA DVTPAPEQLI 300
  301 QVYELTLHYT QHWDHNVVTA SLELLQQMFR TPPPELLNVL ITRGKITHTS VFREEMESRA 360
  361 RSGSILELIA GGSTCSPLLL RKQKGKLLSG EEEGLEDDPE RAEVTTGSFT ASVGGDSSSE 420
  421 APSSSGVSSL GTSDIITEQP RSSQHALQPG DSVDLSASEQ GVGPDTPDEE DEEDMLSRSS 480
  481 SGGAGLVSTS GDLVTDANQM SAGAVSSSPP SESSQTTTEG PDSAVTPSDC AELVLDGSES 540
  541 QYSGMQIGTL QDEEEEGSAP PPDKPPEPFS QSALALSKPH LLEGKGHNRQ SSDSSVDRFI 600
  601 PKEEVLEPAE LDNKPSRIKG DIGHYTDPKE EPLMHCVRLL AASFLLTGQR NGLVPDNEVR 660
  661 VSVKALAVSC VGAAAALLPE AFFNLLYLQP LDGQQTEEQQ YISDILQYIE HGDHQIRGAT 720
  721 AILCGALIQA IQLKTRYNTE TWLSQIQSVT GSSVTLENFV PLLQRSLKDE SSVTCKMACA 780
  781 AVRHCIMALC NGSLSELGLQ LLIDLLTLKN CSYWLVRTEL LETLAEIDFR LISFLERKTE 840
  841 KLHKGEHHYT GLLRLQDRVL NDVVLYLLGD EDPRVRHVAA NTIGRLVPRL FFDCDQGQTD 900
  901 PVVAIARDQS SVHLQLLMHE TQPPSQFTVS TITRTYRGFN LCQSAPDVTV ENNLSRVITA 960
  961 ISHALTSSTS RAMTFGCCEA LCLLSSTFPV CNWSTGWHCG FVSSSVFHLN RSSQYRSRGR1020
 1021 SFSLSQSGSN EEVRRSLTVG VASMVLSLIS SAWFPLDLSA HQAALLLAGN LLAAVAPKCM1080
 1081 KSPWAGEEES SPASSKVEEP WPALNDRSLV VMVEQLFSHL LKILNICAHV LDDTPPGPAV1140
 1141 KASLPSLANT PSLSPIRRKG KEKDMMEAGT TPMSPKKGGE TNTGRAADST ATAAVNKSTT1200
 1201 LGSFYHLPPY LKLYDALRAT HANYKVTLDL HNPNEKFGGF LRSALDVLSQ LLELATLHDI1260
 1261 GKCVEEILGY LKSCFSREPT MATVCVQQLL KALFGTNLAS QYEGASSNPC RSQGKALRLG1320
 1321 SSSVRPGLYH YCFMAPYTHF TQALADASLR NMVQAEQEQD ASGWFDVMQK VSNQLRSSIT1380
 1381 NVTRHRGDKN AIHNHIRLFE PLVIKALKQY TTSTSVALQR QVLDLLAQLV QLRVNYCLLD1440
 1441 SDQVFIGFVL KQFEYIEVGQ FRDSEEIVPN IFFFLVLLSY ERYHSKQIIS IPKIIQLCDG1500
 1501 IMASGRKAVT HAIPALQPIV HDLFVLRGSN KADAGKELET QKEVVVSMLL RLIQHHQVLE1560
 1561 MFILVLQQCH KENEDKWKRL SRQVADIILP MIGKQQMHLD SHEALGVLNT LFESVAPSSL1620
 1621 RPVDMLLKSM FITPSTLASV GTVQLWVSGI LAILRVLISQ STEDIILSRI QELSLSPYLL1680
 1681 SCPTIRRLCD DDVPAPPETL PVAMEDANGE TTRFPPEETF ARFLLQLVGV LLDDIANKQV1740
 1741 KVDMSEQQHT FYCQQLGTLL MCLIHIFKSG MFRRITAAGS KLLKAEGGEG GDFYTLEGLN1800
 1801 SLVLQLITTH PSLVLLWCQV LLIINYTNYT WWSEVHQTPR RHSLSSTKLL SPHSSGEEER1860
 1861 PEGKLTMCNR EIVRRGALIL FCDYVCQNLH DSEHLTWLTV NHVSDLISLS HEPPVQDLIS1920
 1921 AVHRNSAASG LFIQAIQSRC DNLCTPVMLK KTLQCLEGIH LSQSGALLML YVDKLLNTPF1980
 1981 RVLARMVDTL ACRRVEMLLA ETLQNSIAQL PLEELDRIQQ YLQTSGLAQR HQRFFSLLDR2040
 2041 FRATVAEDTT SPVAPITTHP LDGDPPPPPE NVEPNKEWYV TLVKSQCCLR GEGALYETTE2100
 2101 LLTKLPQSDL NAIMTCKDFN LCLLASCLSV GVQRVCKDHG AVLFDTAQQV TFERLAGVIE2160
 2161 LLPSPHQPLL PSSKVCPDYW QKLNQVYGEP GFYQTVLSLC GVLSQYLLSL SKLPSSMHIP2220
 2221 KDRETLITTF STLAIEVVVW RLLQDQLPLS VDMQMSLSCL CLALQQPAVW THFTSHSYLT2280
 2281 HTCSIIHCIQ LLIHAVAVGP GDQFLRPERK ISEQSEDQVD SSDNQREWHC CEIMAELVEG2340
 2341 LQTVLTLGHH KNKNIPAFLT PTLRNVIISL ARLPLVNSYT RIPPLVWKLG WSPKLSGEFG2400
 2401 TALPEIPVEF LQEKDVFREF LYRINTLGWS SRTQFEETWA TLLGVLVTQP ITMDQEEETQ2460
 2461 QEEDLERTQI NVLAVQAITS LVLSAMTLPT AGNPAVSCPE QQPRNKILKA LDTRFGRKLS2520
 2521 VIRGMVEREI QAMVSKRDNI ATHFPYQAWD PVPSLSSSTA GTLISHEKLL LQINTEREMG2580
 2581 NMDYKLGQVS IHSVWLGNNI TPLREEEWGE DEEDEADAPA PASPQLSPIN SRKHRAGVDI2640
 2641 HSCSQFLLEL YSQWILPGSP SSRKTPVVLI SEVVRSLLAV SDLFTERNQF DMMFSTLTEL2700
 2701 QKVHPPEDEI LNQYLVPAIC KAAAVLGMDK AIAEPVCRLL ESTLRSTHLP SRIGALHGVL2760
 2761 YVLECDLLDD TARQLIPTVS EYLLSNLRAI AHCVNLHNQQ HVLVMCAVAF YMMENYPLDV2820
 2821 GSEFNAGIIQ LCCMILSASE EATPSIIYHC VLRGLERLLL SEQLSRMDAE TLVKLSVDRV2880
 2881 NMPSPHRAMA ALGLMLTCMY TGVAGEEGKE KGSPGRPADA DPTAPDSESV IVAMERVSVL2940
 2941 FDRIRKGFPS EARVVARILP QFLDDLFPLQ DVMNKVIGEF LSNQQPYPQF MATVVYKVFQ3000
 3001 TLHATGQSSM VRDWVLLSLS NFTQRTPVAM AMWSLSCFFV SASTSQWISA LLPHVISRMG3060
 3061 KSDTVDISLF CLVAMDFYRH QIDEELDRRA FQSVFEMVAS PGSPYYQLLC CLQSIHQDTS3120
 3121 L

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