YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S29A3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.99
Transmembrane Helix	50	72	0.89
Non-Cytoplasmic	73	105	0.96
Transmembrane Helix	106	126	0.94
Cytoplasmic	127	134	0.81
Transmembrane Helix	135	155	0.93
Non-Cytoplasmic	156	163	0.83
Transmembrane Helix	164	187	0.88
Cytoplasmic	188	199	0.84
Transmembrane Helix	200	222	0.91
Non-Cytoplasmic	223	229	0.91
Transmembrane Helix	230	252	0.94
Cytoplasmic	253	305	0.98
Transmembrane Helix	306	326	0.93
Non-Cytoplasmic	327	344	0.84
Transmembrane Helix	345	362	0.91
Cytoplasmic	363	377	0.77
Transmembrane Helix	378	396	0.92
Non-Cytoplasmic	397	412	0.83
Transmembrane Helix	413	436	0.89
Cytoplasmic	437	450	0.84
Transmembrane Helix	451	471	0.94
Non-Cytoplasmic	472	475	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFASEDIAY HSSNAVYRVP SNRHEADQEA LLGKPLDYPA PGLQRPEDRF NGAYIIFFCL  60
   61 GIGGLLPWNF FVTAKEYWAF KLRNCSSPAS GKDPEDADIL NYFESYLAVA STVPSLLFLV 120
  121 ANFLLVNRIR VHVRVLASLS VSLAIFVVMA VLVRVDTSSW TRGFFSIAMA CMAIISSSST 180
  181 IFNSSVYGLT GSFPMRNAQA LISGGAMGGT VSAVASLVDL AASSDVRDSA LAFFLTAAVF 240
  241 LGLCVGLYLL LPQLEYARYY MRPVVPIHVF SSEDSPPRDA PSTSSVAPAS RAVHTPPLGP 300
  301 ILKKTAGLGF CAVFLYFITA LIFPAISTNI QPMHKGTGSP WTSKFYVPLT VFLLFNFADL 360
  361 CGRQVTAWIQ VPGPRSKLLP ILAVSRVCLV PLFLLCNYQP RSHLTLVLFQ SDIYPILFTC 420
  421 LLGLSNGYLS TLVLMYGPKI VPRELAEATS VVMLFYMSLG LMLGSACAAL LEHFI