YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S4A5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	513	0.72
Transmembrane Helix	514	536	0.85
Cytoplasmic	537	548	0.69
Transmembrane Helix	549	569	0.86
Non-Cytoplasmic	570	599	0.71
Transmembrane Helix	600	621	0.85
Cytoplasmic	622	630	0.59
Transmembrane Helix	631	645	0.65
Non-Cytoplasmic	646	730	0.86
Transmembrane Helix	731	753	0.83
Cytoplasmic	754	768	0.86
Transmembrane Helix	769	790	0.91
Non-Cytoplasmic	791	820	0.90
Transmembrane Helix	821	840	0.93
Cytoplasmic	841	860	0.80
Transmembrane Helix	861	886	0.83
Non-Cytoplasmic	887	920	0.73
Transmembrane Helix	921	940	0.79
Cytoplasmic	941	946	0.44
Transmembrane Helix	947	966	0.75
Non-Cytoplasmic	967	994	0.38
Transmembrane Helix	995	1029	0.79
Cytoplasmic	1030	1112	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVEEKAGVK KLEPTSYRRR HPEQDFPSIH IGFPVPGYSQ RKSDSKGHLS GLQRVQWSLQ  60
   61 PDKSQQDLAG PDGIKASSLG GSVDFTKRIR SPAAEQLQDI LGEEDEAPNP TLFTEMDTLQ 120
  121 HDGDQMEWKE SARWIKFEEK VEEGGERWSK PHVSTLSLHS LFELRTCLQT GTVLLDLDSG 180
  181 SLPQIIDDVI EKQIEGGLLR PELRERVSYV LLRKHRHQTK KPIHRSLADI GKSVSTTNRS 240
  241 SARSPSAGPT LHHSTEDLRI RQSTSYGHLC HAQSRSMNDI SHTPNTDQRK NKFMKKIPKD 300
  301 SEASNVLVGE VDFLDQPFIA FVRLAQSSML GGVTEVPVPT RFLFILLGPS GRAKSYNEIG 360
  361 RAIATLMVDD LFSDVAYKAR NREDLIAGVD EFLDEVIVLP PGEWDPNIRI EPPKKVPSAD 420
  421 KRKSVFSLAE LGQMNGSVGR SGASAGGGGS GGGAGGSGAG GGGSGNEAEM PAMHEIGEEL 480
  481 IWTGRFFGGL RLDVKRKLPW FPSDFYDGFH IQSISAVLFI YLGCITNAIT FGGLLGDATD 540
  541 NYQGVMESFL GTAMAGSLFC LFSGQPLIIL SSTGPILIFE KLLFDFSKAN GLDYMEFRLW 600
  601 IGLHSAIQCL ILVATDASFI IKYITRFTEE GFSTLISFIF IYDAIKKMIG AFKYYPINTD 660
  661 FKPDSITTYK CECVAPDTVN TTTVNDSALL VPNTNMSVYT PLNLTALDWS LLSKKECLSY 720
  721 GGRLLGSSCQ FVPDLALMSF ILFFGTYSMT LTLKKFKFSR YFPTKVRTLV ADFSIVFSIL 780
  781 LFCGIDACFG LQTPKLHVPN VIKPTRPDRG WFVAPFGKNP WWVYPASILP ALLVTILIFM 840
  841 DQQITAVIVN RKENKLRKAA GYHLDLFWVG ILMALCSFMG LPWYVAATVI SIAHIDSLKM 900
  901 ETETSAPGEQ PQFLGVREQR VTGVMVFILT GISVFLAPIL KYIPMPVLYG VFLYMGVASL 960
  961 NGIQFWDRCK LFLMPAKHQP DHAFLRHVPL RRIHLFTLVQ ILCLALLWIL KSTMAAIIFP1020
 1021 VMILGLIIVR RLLDLIFSQH DLAWIDNILP EKEKKESDRK KRRKEVHENT DKEPQFLPPS1080
 1081 VVKIPMEGIP SDPQNGIHCV GRKRSSSWSH SL