YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47575853, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPDLDTGHN TSAPAHWGEL KDDNFTGPNQ TSSNSTLPQL DVTRAISVGL VLGAFILFAI  60
   61 VGNILVILSV ACNRHLRTPT NYFIVNLAIA DLLLSFTVLP FSATLEVLGY WVLGRIFCDI 120
  121 WAAVDVLCCT ASILSLCAIS IDRYIGVRYS LQYPTLVTRR KAILALLSVW VLSTVISIGP 180
  181 LLGWKEPAPN DDKECGVTEE PFYALFSSLG SFYIPLAVIL VMYCRVYIVA KRTTKNLEAG 240
  241 VMKEMSNSKE LTLRIHSKNF HEDTLSSTKA KGHNPRSSIA VKLFKFSREK KAAKTLGIVV 300
  301 GMFILCWLPF FIALPLGSLF STLKPPDAVF KVVFWLGYFN SCLNPIIYPC SSKEFKRAFM 360
  361 RILGCQCRGG RRRRRRRRLG GCAYTYRPWT RGGSLERSQS RKDSLDDSGS CMSGSQRTLP 420
  421 SASPSPGYLG RGTQPPVELC AFPEWKPGAL LSLPEPPGRR GRLDSGPLFT FKLLGDPESP 480
  481 GTEGDTSNGG CDTTTDLANG QPGFKSNMPL APGHF

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.97
Transmembrane Helix	46	71	0.86
Cytoplasmic	72	81	0.87
Transmembrane Helix	82	103	0.89
Non-Cytoplasmic	104	120	0.81
Transmembrane Helix	121	141	0.96
Cytoplasmic	142	161	0.91
Transmembrane Helix	162	182	0.95
Non-Cytoplasmic	183	204	0.91
Transmembrane Helix	205	227	0.85
Cytoplasmic	228	294	0.97
Transmembrane Helix	295	316	0.91
Non-Cytoplasmic	317	331	0.85
Transmembrane Helix	332	351	0.69
Cytoplasmic	352	515	0.73