YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|51471440|ref|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSAGTPGRV PAQPAAFGRA LLSPGLAGAA GVPAEEAIVL ANRGLRVPFG REVWLDPLHD  60
   61 LVLQVQPGDR CAVSVLDNDA LAQRPGRLSP KRFPCDFGPG EVRYSHLGAR SPSRDRVRLQ 120
  121 LRYDAPGGAV VLPLVLEVEV VFTQLEVVTR NLPLVVEELL GTSNALDARS LEFAFQPETE 180
  181 ECRVGILSGL GALPRYGELL HYPQVPGGAR EGGAPETLLM DCKAFQELGV RYRHTAASRS 240
  241 PNRDWIPMVV ELRSRGAPVG SPALKREHFQ VLVRIRGGAE NTAPKPSFVA MMMMEVDQFV 300
  301 LTALTPDMLA AEDAESPSDL LIFNLTSPFQ PGQGYLVSTD DRSLPLSSFT QRDLRLLKIA 360
  361 YQPPSEDSDQ ERLFELELEV VDLEGAASDP FAFMVVVKPM NTMAPVVTRN TGLILYEGQS 420
  421 RPLTGPAGSG PQNLVISDED DLEAVRLEVV AGLRHGHLVI LGASSGSSAP KSFTVAELAA 480
  481 GQVVYQHDDR DGSLSDNLVL RMVDGGGRHQ VQFLFPITLV PVDDQPPVLN ANTGLTLAEG 540
  541 ETVPILPLSL SATDMDSDDS LLLFVLESPF LTTGHLLLRQ THPPHEKQEL LRGLWRKEGA 600
  601 FYERTVTEWQ QQDITEGRLF YRHSGPHSPG PVTDQFTFRV QDNHDPPNQS GLQRFVIRIH 660
  661 PVDRLPPELG SGCPLRMVVQ ESQLTPLRKK WLRYTDLDTD DRELRYTVTQ SPTDTDENHL 720
  721 PAPLGTLVLT DNPSVVVTHF TQAQINHHKI AYRPPGQELG VATRVAQFQF QVEDRAGNVA 780
  781 PGTFTLYLHP VDNQPPEILN TGFTIQEKGH HILSETELHV NDVDTDVAHI SFTLTQAPKH 840
  841 GHMRVSGQIL HVGGLFHLED IKQGRVSYAH NGDKSLTDSC SLEVSDRHHV VPITLRVNVR 900
  901 PVDDEVPILS HPTGTLESYL DVLENGATEI TANVIKGTNE ETDDLMLTFL LEDPPLYGEI 960
  961 LVNGIPAEQF TQRDILEGSV VYTHTSGEIG LLPKADSFNL SLSDMSQEWR IGGNTIQGVT1020
 1021 IWVTILPVDS QAPEIFVGEQ LIVMEGDKSV ITSVHISAED VDSLNDDILC TIVIQPTSGY1080
 1081 VENISPAPGS EKSRAGIAIS AFNLKDLRQG HINYVQSVHK GVEPVEDRFV FRCSDGINFS1140
 1141 ERQFFPIVII PTNDEQPEMF MREFMVMEGM SLVIDTPILN AADADVPLDD LTFTITQFPT1200
 1201 HGHIMNQLIN GTVLVESFTL DQIIESSSII YEHDDSETQE DSFVIKLTDG KHSVEKTVLI1260
 1261 IVIPVDDETP RMTINNGLEI EIGDTKIINN KILMATDLDS EDKSLVYIIR YGPGHGLLQR1320
 1321 RKPTGAFENI TLGMNFTQDE VDRNLIQYVH LGQEGIRDLI KFDVTDGINP LIDRYFYVSI1380
 1381 GSIDIVFPDV ISKGVSLKEG GKVTLTTDLL STSDLNSPDE NLVFTITRAP MRGHLECTDQ1440
 1441 PGVSITSFTQ LQLAGNKIYY IHTADDEVKM DSFEFQVTDG RNPVFRTFRI SISDVDNKKP1500
 1501 VVTIHKLVVS ESENKLITPF ELTVEDRDTP DKLLKFTITQ VPIHGHLLFN NTRPVMVFTK1560
 1561 QDLNENLISY KHDGTESSED SFSFTVTDGT HTDFYVFPDT VFETRRPQVM KIQVLAVDNS1620
 1621 VPQIAVNKGA STLRTLATGH LGFMITSKIL KVEDRDSLHI SLRFIVTEAP QHGYLLNLDK1680
 1681 GNHSITQFTQ ADIDDMKICY VLREGANATS DMFYFAVEDG GGNKLTYQNF RLNWAWISFE1740
 1741 KEYYLVNEDS KFLDVVLKRR GYLGETSFIS IGTRDRTAEK DKDFKGKAQK QVQFNPGQTR1800
 1801 ATWRVRILSD GEHEQSETFQ VVLSEPVLAA LEFPTVATVE IVDPGDEPTV FIPQSKYSVE1860
 1861 EDVGELFIPI RRSGDVSQEL MVVCYTQQGT ATGTVPTSVL SYSDYISRPE DHTSVVRFDK1920
 1921 DEREKLCRIV IIDDSLYEEE ETFHVLLSMP MGGRIGSEFP GAQVTIVPDK DDEPIFYFGD1980
 1981 VEYSVDESAG YVEVQVWRTG TDLSKSSSVT VRSRKTDPPS ADAGTDYVGI SRNLDFAPGV2040
 2041 NMQPVRVVIL DDLGQPALEG IEKFELVLRM PMNAALGEPS KATVSINDSV SDLPKMQFKE2100
 2101 RIYTGSESDG QIVTMIHRTG DVQYRSSVRC YTRQGSAQVM MDFEERPNTD TSIITFLPGE2160
 2161 TEKPCILELM DDVLYEEVEE LRLVLGTPQS NSPFGAAVGE QNETLIRIRD DADKTVIKFG2220
 2221 ETKFSVTEPK EPGESVVIRI PVIRQGDTSK VSIVRVHTKD GSATSGEDYH PVSEEIEFKE2280
 2281 GETQHVVEIE VTFDGVREMR EAFTVHLKPD ENMIAEMQLT KAIVYIEEMS SMADVTFPSV2340
 2341 PQIVSLLMYD DTSKAKESAE PMSGYPVICI TACNPKYSDY DKTGSICASE NINDTLTRYR2400
 2401 WLISAPAGPD GVTSPMREVD FDTFFTSSKM VTLDSIYFQP GSRVQCAARA VNTNGDEGLE2460
 2461 LMSPIVTISR EEGLCQPRVP GVVGAEPFSA KLRYTGPEDA DYTNLIKLTV TMPHIDGMLP2520
 2521 VISTRELSNF ELTLSPDGTR VGNHKCSNLL DYTEVKTHYG FLTDATKNPE IIGETYPYQY2580
 2581 SLSIRGSTTL RFYRNLNLEA CLWEFVSYYD MSELLADCGG TIGTDGQVLN LVQSYVTLRV2640
 2641 PLYVSYVFHS PVGVGGWQHF DLKSELRLTF VYDTAILWND GIGSPPEAEL QGSLYPTSMR2700
 2701 IGDEGRLAVH FKTEAQFHGL FVLSHPASFT SSVIMSADHP GLTFSLRLIR SEPTYNQPVQ2760
 2761 QWSFVSDFAV RDYSGTYTVK LVPCTAPSHQ EYRLPVTCNP REPVTFDLDI RFQQVSDPVA2820
 2821 AEFSLNTQMY LLSKKSLWLS DGSMGFGQES DVAFAEGDII YGRVMVDPVQ NLGDSFYCSI2880
 2881 EKVFLCTGAD GYVPKYSPMN AEYGCLADSP SLLYRFKIVD KAQPETQATS FGNVLFNAKL2940
 2941 AVDDPEAILL VNQPGSDGFK VDSTPLFQVA LGREWYIHTI YTVRSKDNAN RGIGKRSVEY3000
 3001 HSLVSQGKPQ STTKSRKKRE IRSTPSLAWE IGAENSRGTN IQHIALDRTK RQIPHGRAPP3060
 3061 DGILPWELNS PSSAVSLVTV VGGTTVGLLT ICLTVIAVLM CRGKESFRGK DAPKGSSSSE3120
 3121 PMVPPQSHHN DSSEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle