YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51470915\|ref\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGLAGMGG IQNEKETMQS LNDCLASYPD RTFEDQRAQI FANTVDNARI ILQIDNARLA  60
   61 ADDFRIKYET ELAMCQSVKS EIHGLHKVID DTNVTRLQLE TEIEALKEEL LFMKNHEKEV 120
  121 KGLQAQIASS GLTMETDAPK SQDHAKIMAD IRNNTTSWLG RTERSWTSTG LSRLRRAPQW 180
  181 SHAVRQGIPG LEESQHWIAL PLGILYLLAL VGNVTILFII WMDPSLHQSM YLFLSMLAAI 240
  241 DLVLASSTAP KALAVLLVHA HEIGYIVCLI QMFFIHAFSS MESGVLVAMA LDCYVAICHP 300
  301 LHHSTILHPG VIGCIGMVVL VRGLLLLIPF PILLGKLIFC QATIIGHAYC EHMAVVKLAC 360
  361 SETTVNRAYG LTMALLVIGL DVLAIGVSYA HILQAVLKVP GSEARLKAFS TCGSHICVIL 420
  421 VFYVPGIFSF LTHRFGHHVP HHVHVLLATW YLLMPPALNP LVYGVKTQQI RQRVLRVFTQ 480
  481 KD

Type	Start	End	Confidence
Cytoplasmic	1	197	0.81
Transmembrane Helix	198	221	0.90
Non-Cytoplasmic	222	228	0.66
Transmembrane Helix	229	249	0.86
Cytoplasmic	250	256	0.54
Transmembrane Helix	257	279	0.74
Non-Cytoplasmic	280	304	0.51
Transmembrane Helix	305	326	0.85
Cytoplasmic	327	331	0.51
Transmembrane Helix	332	350	0.62
Non-Cytoplasmic	351	370	0.79
Transmembrane Helix	371	393	0.90
Cytoplasmic	394	410	0.82
Transmembrane Helix	411	431	0.90
Non-Cytoplasmic	432	442	0.80
Transmembrane Helix	443	465	0.86
Cytoplasmic	466	482	0.93